Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001305435.1_202015-10- 01] 18 sequences; 9,283,240 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2 100 3e-16 >seq2 Length=1237296 Score = 100 bits (110), Expect = 3e-16 Identities = 172/250 (69%), Gaps = 0/250 (0%) Strand=Plus/Plus Query 53490 ATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTG 53549 ||||| | | || ||||| ||||| | || |||| || |||| | | || |||| Sbjct 372469 ATGGATTAATTCCGATGCTGCGCGTTTATAATGACACTGCTAGGTATATTGATCAAGGTG 372528 Query 53550 GTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGG 53609 | |||||||| || || | | || || || | ||||||||||||| || || | | Sbjct 372529 GAGGGAAGCGTAAAGGTGCCATTGCAATTTATTTGGAGCCGTGGCACGTTGATGTTGTAG 372588 Query 53610 AGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTA 53669 ||||| | || | | |||||| || | ||||||||| | || || || || ||| Sbjct 372589 AGTTTATTGAAATCAGGAAGAATCACGGAAAGGAAGAGATGAGATGTCGCGATCTCTTTC 372648 Query 53670 CAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACC 53729 | || || ||| |||| || || |||||| ||| || |||||||| | || ||| | Sbjct 372649 CTGCCCTTTGGGTTCCTGATCTGTTCATGGAAAGAGTTGAGAAGGATCAAGATTGGACTC 372708 Query 53730 TGATGTGCCC 53739 | |||||||| Sbjct 372709 TAATGTGCCC 372718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215876876400