Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001305455.2_202016-05- 09] 18 sequences; 9,104,817 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq11 250 2e-61 >seq11 Length=1218479 Score = 250 bits (276), Expect = 2e-61 Identities = 592/872 (68%), Gaps = 33/872 (4%) Strand=Plus/Plus Query 13370 TTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTT 13429 |||||||||||| |||||| ||||| || |||||||||||||||| ||||| ||| | Sbjct 83000 TTTGATATTCACCAACTCTCTTTTCGAAGAAGTTAGTTTTACCTTGAAGTGAAATAAGGT 83059 Query 13430 CCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATA 13489 |||| |||| || ||||| | | | | ||| | | | | | || | || Sbjct 83060 CCATCCAATCAAAAGGATTAGAAACGTTGTAGATTTTTGGAATATCCAAGGCAAAAAGTA 83119 Query 13490 ATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCAC-AATTCATACCTATTAGT 13548 |||||||||||| ||| ||||||||||| | ||| || || | |||||||||| || || Sbjct 83120 ATCTATCAGCAACAAATTCAATATATTGGGCCAT-AAGTCTCGAATTCATACCAATAAGA 83178 Query 13549 TTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATA 13608 | ||||||| | | | ||| | | |||| | ||||| || ||| || Sbjct 83179 TCAACAGGAAGAGAGTCACAAAGAAAGTTTCTTTCAACTTCAACAGCTTCTGATATGATT 83238 Query 13609 ATCTTAATAATGTCATTAGAAGGAGG------ATATTTTAGATGTTTAAAAATTAAACAC 13662 | || || | | || || || | |||| || |||| | |||||||| Sbjct 83239 -TGTTG-TACTCT----AGGAGCTGGTAATTTAAATTTAAGGGCTTTATATATTAAACAA 83292 Query 13663 GCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCT 13722 ||||||||| ||| || || ||||| | |||||||||||| || |||||||| | ||| Sbjct 83293 GCAAAATCAGCATGGAGACCTTCATCACGACTAATAAGTTCATTAGAAAATGTGAGTCCA 83352 Query 13723 GGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT-CCGGAAAAGAATAT 13781 ||||| | ||| |||||||| | |||||| |||||| | || | | || ||||| | || Sbjct 83353 GGCATAAGTCCACGTTTTTTAAGCCAAAAAATTGCA-CAAAAGCTACCAGAAAATAGAAT 83411 Query 13782 TCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATAT 13841 ||| ||||| ||| || | || | || ||| |||| ||| | || || Sbjct 83412 TCCTTCAACAGCACAGAATCCAATAATTCTTTCAGCAAAAGATCGCTCAGAATTC---AT 83468 Query 13842 CCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAA 13901 |||||| | |||||||| | ||| ||||| | | || || ||||| | || Sbjct 83469 CCATTTAGTTGCCCATTCTGCTTTCTTTTTTACAGCTTCAATATGAGAAATTGCTTCAAA 83528 Query 13902 TAA-ATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTT 13960 | || | | | |||||| | | ||| ||| ||||||||||||| ||| ||| Sbjct 83529 GAGCATTTGACGT-TCTTTAATTTCAGTAATATATCTATCAATAAGTAATGAATAAGTTT 83587 Query 13961 CAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATT 14020 || ||||| | ||| |||| || |||||| ||||| | ||||||||| | || Sbjct 83588 CACTATGTATTTGTTCAATAGACATTTGAAAAGCATAATACATTCTAGCTTCCGGTATTT 83647 Query 14021 GTACCTC-CGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCA 14079 ||| || | | |||| || |||| |||||||| |||||||||||||||| || ||| Sbjct 83648 GTATTTCTCTAAGGAAAT-TTACTGCTAAGTTTTCCATAACAATACCATCACTTGCAGCA 83706 Query 14080 AAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCA---TTGTTGAGTTTTTTCCAA 14136 || ||||| || | | ||| ||||| || || |||| | || || ||| |||| Sbjct 83707 AAGAATGCTAAAACATATTTGATAAA--ATGTCT-TTCAGGGTCTTTAAGACTTTCCCAA 83763 Query 14137 TCGGCTA-AATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTA-GCGACAGCTT 14194 || ||| ||| | | ||||| | ||| || | | || ||||| | || |||||| Sbjct 83764 TC-TCTAGTATCTTGACTTAGATCAATTTCTTC-AGTAACCCAAAACGACGCTTCAGCTT 83821 Query 14195 TTTTATACATTACCCATATTTCTTTATATAAT 14226 ||||||||||| ||| || |||||| |||| Sbjct 83822 TTTTATACATTGACCAAATATCTTTAATTAAT 83853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478588692317520