Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001305455.2_202016-05- 09] 18 sequences; 9,104,817 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq1 96.9 2e-15 seq16 86.0 4e-12 >seq1 Length=1277761 Score = 96.9 bits (106), Expect = 2e-15 Identities = 166/239 (69%), Gaps = 14/239 (6%) Strand=Plus/Plus Query 33141 CACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAG 33200 |||||||||| | | || || |||||||| || ||||| || || |||||||| |||| Sbjct 550147 CACCGCCTCTAAGTCTTAATACTAAATGCAAAGTGGACTCCTTCTGGATATTGTAGTCAG 550206 Query 33201 ACAAATTGAGTTGG----TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCC 33256 | | ||||| || ||||||||||||||| ||| || | ||| || || || Sbjct 550207 ATA----GAGTTCTACCATCTTCCAATTGCTTTCCAGCAAAGATCAGACGCTGTTGATCA 550262 Query 33257 GTGGGTATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTG 33313 | || || || || || || ||| |||| |||| | | ||| || ||| Sbjct 550263 GGAGGAATACCCTCCTTATCCTGGATCTTTGCCT---TTACATTCTCAATAGTATCGGAA 550319 Query 33314 GGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 |||| ||| |||| || || || ||||| || | |||||| || ||||||||||| || Sbjct 550320 GGTTCAACTTCCAATGTGATGGTCTTTCCTGTTAAAGTTTTGACAAAAATTTGCATCTT 550378 >seq16 Length=842072 Score = 86.0 bits (94), Expect = 4e-12 Identities = 161/235 (69%), Gaps = 14/235 (6%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| ||||| | | ||| || ||||| || || ||||||||||| || ||||| ||||| Sbjct 531471 ACCACCTCTGAGTCTCAATACTAAATGTAAAGTAGACTCTTTTTGAATGTTGTAGTCAGA 531412 Query 33202 CAAATTGAGTT----GGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCG 33257 | ||||| || || ||||| ||||| ||| ||||||||||| || || | Sbjct 531411 GA----GAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATTAAACGTTGTTGATCAG 531356 Query 33258 TGGGTATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGG 33314 || || || || || || |||| ||| || || | | ||| || || | Sbjct 531355 GTGGGATTCCCTCCTTATCTTGAATCTTTGCC---TTAACATTCTCAATTGTATCTGAAG 531299 Query 33315 GTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 | | ||| |||| ||| || || ||||| || | ||| || |||||||| ||||| Sbjct 531298 GCTCAACTTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACGAAAATCTGCAT 531244 Score = 84.2 bits (92), Expect = 1e-11 Identities = 163/239 (68%), Gaps = 14/239 (6%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| ||||| | | || || || || || || ||||||||||| || ||||||||||| Sbjct 531243 ACCACCTCTAAGTCTCAGGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGA 531184 Query 33202 CAAATTGAGTT----GGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCG 33257 | ||||| || || ||||| ||||| ||| || |||||||| || || | Sbjct 531183 GA----GAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAG 531128 Query 33258 TGGGTATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGG 33314 || || ||||| || || |||| ||| || || | | ||| || || | Sbjct 531127 GTGGGATTCCTTCCTTATCTTGAATCTTTGCC---TTAACATTCTCAATTGTATCTGAAG 531071 Query 33315 GTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTT 33373 ||| ||| |||| ||| || || ||||| || | ||| || || ||||| ||||| ||| Sbjct 531070 GTTCAACTTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCATATTT 531012 Score = 84.2 bits (92), Expect = 1e-11 Identities = 160/234 (68%), Gaps = 14/234 (6%) Strand=Plus/Minus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 |||||||| | | || || || || || || ||||||||||| || ||||||||||| Sbjct 531698 CCGCCTCTAAGTCTCAGGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGAG 531639 Query 33203 AAATTGAGTT----GGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGT 33258 | ||||| || || ||||| ||||| ||| || |||||||| || || | Sbjct 531638 A----GAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGG 531583 Query 33259 GGGTATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGG 33315 || || ||||| || || |||| ||| || || | | ||| || || || Sbjct 531582 TGGGATTCCTTCCTTATCTTGAATCTTTGCC---TTAACATTCTCAATTGTATCTGAAGG 531526 Query 33316 TTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 | ||| |||| ||| || || ||||| || | ||| || |||||||| ||||| Sbjct 531525 CTCAACTTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACGAAAATCTGCAT 531472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318777530068164