Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001305455.2_202016-05- 09] 18 sequences; 9,104,817 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq11 266 8e-66 seq13 100 7e-16 >seq11 Length=1218479 Score = 266 bits (294), Expect = 8e-66 Identities = 592/864 (69%), Gaps = 37/864 (4%) Strand=Plus/Minus Query 22105 TACAAGAAAGCAGAAGCTTCCCTATGGGGTGTTTCCGAAATTGATATT--TCCACTGATA 22162 || || ||||| ||||| || | |||| | | ||||||||| | || | |||| Sbjct 83828 TATAAAAAAGCTGAAGCGTCGTTTTGGGTTACTGAAGAAATTGATCTAAGTCAA--GATA 83771 Query 22163 AGACGGATTGGCCAAAACTTACAGAAAACGAACAACATTTTATCAAATATATTCTAGCAT 22222 | |||||| || |||| ||| ||| |||||||||||||||| || |||||| Sbjct 83770 CTAGAGATTGGGAAAGTCTTAAAGACCCTGAAAGACATTTTATCAAATATGTTTTAGCAT 83711 Query 22223 TCTTTGCTACCGCAGACGGTATAGTTTTTGAGAATCTAGTGACTAATTTTGCATCT-GAA 22281 |||||||| | || ||||| ||| | || || ||| | ||| ||| | | ||| Sbjct 83710 TCTTTGCTGCAAGTGATGGTATTGTTATGGAAAACTTAGC-AGTAAATTTCCTTAGAGAA 83652 Query 22282 ATTCAATACCCAGAGGCCAGA-TGTTTCTATGGTGTGCAAATGATGATTGAAAATGTTCA 22340 || ||| || || || ||| ||| | |||| | | |||||| |||||| | | || Sbjct 83651 ATACAAATACCGGAAGCTAGAATGTAT-TATGCTTTTCAAATGTCTATTGAACAAATACA 83593 Query 22341 CGCGGAAACATATTC------TAT-GAT-GCTACAGTCACTCGTAGAAGATAAAGACGAA 22392 ||||| ||||| ||| ||| | || | | ||| ||| |||||| | Sbjct 83592 TAGTGAAACTTATTCATTACTTATTGATAGATATATT-ACT----GAAATTAAAGA---A 83541 Query 22393 CAACGAAACTTATTCCGCGCGATT-CGCACCATTCAATCAATTAAGAATAAGGCAGATTG 22451 | | || | || || ||| | || ||| || | | || || || ||||| || Sbjct 83540 CGTCAAATGCTCTTTGAAGCAATTTCTCAT-ATTGAAGCTGTAAAAAAGAAAGCAGAATG 83482 Query 22452 GGCGCTGAAATGGATGAACAATGAACGTTCATTCGCGGAACGTCTTATTGCATTTGCTGT 22511 ||| ||||||||||| ||| || || || || ||| | |||||| ||| |||| Sbjct 83481 GGCAACTAAATGGATGAATTCTGAGCGATCTTTTGCTGAAAGAATTATTGGATT--CTGT 83424 Query 22512 G--GTTGAAGGCATTTTCTTTTCTGG-AGCATTTTGTGCAATCTTTTGGCTaaaaaaaCG 22568 | |||||||| ||| | |||||||| ||| ||||||||||| |||||||| |||||||| Sbjct 83423 GCTGTTGAAGGAATTCTATTTTCTGGTAGC-TTTTGTGCAATTTTTTGGCTTAAAAAACG 83365 Query 22569 TGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAGGGTCTTCA 22628 || | ||||||| || || || ||||| ||||| | ||||| || ||||| ||||| || Sbjct 83364 TGGACTTATGCCTGGACTCACATTTTCTAATGAACTTATTAGTCGTGATGAAGGTCTCCA 83305 Query 22629 TACCGATTTTGCGTGTATGCTATATCGGAATCATATCATTCATAAACTTCCATATGAAAC 22688 | | |||||||| ||| | ||||| || | | | | |||| | ||| | | Sbjct 83304 TGCTGATTTTGCTTGTTTAATATAT--AAAGCCCTTAAAT-TTAAATTACCAGCTCCTAG 83248 Query 22689 TGTACTTGATATTATTACAAATGCAGTTGAACTTGAACGTCTATTTATTTGCGAGGCGTT 22748 |||| | || || || | || |||||| ||||| | ||| |||| || | | Sbjct 83247 AGTACAACAAATCATATCAGAAGCTGTTGAAGTTGAAAGAAACTTTCTTTGTGACTCTCT 83188 Query 22749 ACCAGTAAGTCTCATTGGTATCAATGCCGAATCAATGAGTACATATATTAAATTTGTTGC 22808 || || ||| |||||||| ||| | | ||| ||||||| |||||||||| Sbjct 83187 TCCTGTTGATCTTATTGGTATGAATTCGAGACTTATGGCCCAATATATTGAATTTGTTGC 83128 Query 22809 AGATCGTCTATTAATTTCACTCGGTTATGCAAAGCAT-TATAACGTCGTTAATCCATTTG 22867 ||| | || | ||| || || ||| | || || || ||||| |||||| |||| Sbjct 83127 TGATAGATTACT-TTTTGCCTTGGATATTCCAAAAATCTACAACGTTTCTAATCCTTTTG 83069 Query 22868 AATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCTTCGAAAAAAGAGTTGGTG 22927 | |||||||| |||||||||||| |||| || || || ||||||||||| |||||||||| Sbjct 83068 ATTGGATGGACCTTATTTCACTTCAAGGTAAAACTAACTTCTTCGAAAAGAGAGTTGGTG 83009 Query 22928 AATACCAAAAAGCAGGTGTTATGG 22951 |||| |||| || || ||||||| Sbjct 83008 AATATCAAATGGCTGGAGTTATGG 82985 >seq13 Length=1010751 Score = 100 bits (110), Expect = 7e-16 Identities = 177/258 (69%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 145532 TAAATCTTCATCTGAAAATCCAGTTCCGATCTTGCATACACTTTGGAACACTTCTTCGTC 145591 |||| |||||| |||||||| ||||| ||| |||||| ||| | || || || || Sbjct 863528 TAAAATTTCATCAGAAAATCCTGTTCCTGCCTTACATACAGTTTCATATACCTCCTCCTC 863469 Query 145592 TGGATCATACACCGCAAGAAGGTATGCACCATATACACCAGTACGTTTTCCGCGACCGGT 145651 || || || || || | || | | ||| | || ||| | | ||| || || Sbjct 863468 TGTATTGTAAACAGCTAATAGAAAAGTTCCAAAAACCCCATTTCTTTTACCTTTTCCATA 863409 Query 145652 ATACCCCGCAATTGGTACAAGATCACAACTATCACCCATTCCGGCAAGATAATCCTTTTT 145711 | | | ||||| || |||| |||| ||||||| | ||| | | |||||| || || Sbjct 863408 ACATGCTGCAATAGGAACAACATCAATACTATCAGTAAGTCCATCCACATAATCTTTCTT 863349 Query 145712 AAGTTTTAGCCAATTGAGAGAACGTTTCGATGGTTCATAGCTAGAGTTATCGTCCAATGA 145771 || ||||| ||| || ||||| | ||| || ||||||||||| | ||||| | ||| | Sbjct 863348 AATTTTTAACCAGTTAAGAGATCTTTTTGAAGGTTCATAGCTTGCATTATCATGCAAAGT 863289 Query 145772 TTTTACCATTAGCCCCTC 145789 || ||||| || ||||| Sbjct 863288 CTTAACCATGAGTCCCTC 863271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303353299414076