Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001305455.2_202016-05- 09] 18 sequences; 9,104,817 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq16 159 3e-34 seq1 131 1e-25 >seq16 Length=842072 Score = 159 bits (176), Expect = 3e-34 Identities = 163/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| ||||| ||||||||||| ||||| || || || || ||||| | ||||| ||| | Sbjct 531012 AAATATGCAGATTTTTGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACC 531071 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | ||||| | || || | || ||| |||||||| ||||| || || ||||| || Sbjct 531072 TTCAGATACAATTGAGAATGTTAAGGCAAAGATTCAAGATAAGGAAGGAATCCCACCTGA 531131 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 |||||||||| | || ||||| || ||||| ||||||||| | || |||| ||||| Sbjct 531132 TCAACAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTA 531191 Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGT 22427 ||||||||||||||| ||||| |||| ||||| Sbjct 531192 CAACATTCAAAAAGAGTCCACTTTACACTTAGT 531224 Score = 150 bits (166), Expect = 2e-31 Identities = 163/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| ||||| ||||| || || || || ||||| | ||||| || | | Sbjct 531244 ATGCAGATTTTCGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAGCCTTCA 531303 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | || ||| |||||||| |||||||| || ||||| |||||| Sbjct 531304 GATACAATTGAGAATGTTAAGGCAAAGATTCAAGATAAGGAGGGAATCCCACCTGATCAA 531363 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||| || ||||| ||||||||| | || |||| || |||||| Sbjct 531364 CAACGTTTAATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGACTACAAC 531423 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGA 22434 ||||||||||| || || |||||||||| ||| || Sbjct 531424 ATTCAAAAAGAGTCTACTTTACATTTAGTATTGAGA 531459 Score = 147 bits (162), Expect = 2e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| ||||| ||||| || || || || ||||| | ||||| || | | Sbjct 531472 ATGCAGATTTTCGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAGCCTTCA 531531 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | || ||| |||||||| ||||| || || ||||| |||||| Sbjct 531532 GATACAATTGAGAATGTTAAGGCAAAGATTCAAGATAAGGAAGGAATCCCACCTGATCAA 531591 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||| || ||||| ||||||||| | || |||| ||||||||| Sbjct 531592 CAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTACAAC 531651 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 ||||||||||| ||||| |||| ||||| Sbjct 531652 ATTCAAAAAGAGTCCACTTTACACTTAGT 531680 >seq1 Length=1277761 Score = 131 bits (144), Expect = 1e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 ||||||||||||||||| ||||||||||| || || || |||| | ||||| ||| | Sbjct 550378 AAGATGCAAATTTTTGTCAAAACTTTAACAGGAAAGACCATCACATTGGAAGTTGAACCT 550319 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 ||||||| | || || | || ||| || || || |||||||||||||| || ||| Sbjct 550318 TCCGATACTATTGAGAATGTAAAGGCAAAGATCCAGGATAAGGAGGGTATTCCTCCTGAT 550259 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 ||||| ||||| || ||||| || || || || || ||| | || | || || ||| Sbjct 550258 CAACAGCGTCTGATCTTTGCTGGAAAGCAATTGGAAGATGGTAGAACTCTATCTGACTAC 550199 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTT 22430 || || || || || ||||| | |||||||| || Sbjct 550198 AATATCCAGAAGGAGTCCACTTTGCATTTAGTATT 550164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727907922170