Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001305455.2_202016-05- 09] 18 sequences; 9,104,817 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq16 152 4e-32 seq1 152 4e-32 >seq16 Length=842072 Score = 152 bits (168), Expect = 4e-32 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 ||||| || | || || |||||||| || |||||||| | || |||||| |||| || Sbjct 531224 ACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGAGAGAGTTCTACCATCCTCT 531165 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 ||||| || |||||||| |||||||| |||||||| || || || ||||| ||||||||| Sbjct 531164 AATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGGATTCCTTCCTTATCTTGA 531105 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || ||| || ||| | || | || || || | ||| ||||| | ||||| || || Sbjct 531104 ATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGTTCAACTTCCAAAGTGATAGTCTTT 531045 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || ||||| || ||||| |||||||| Sbjct 531044 CCTGTCAAAGTCTTAACAAAAATCTGCAT 531016 Score = 143 bits (158), Expect = 2e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 ||||| || | || || |||||||| || |||||||| | || |||||| |||| || Sbjct 531680 ACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGAGAGAGTTCTACCATCCTCT 531621 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 ||||| || |||||||| |||||||| |||||||| || || || ||||| ||||||||| Sbjct 531620 AATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGGATTCCTTCCTTATCTTGA 531561 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || ||| || ||| | || | || || || | || ||||| | ||||| || || Sbjct 531560 ATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGCTCAACTTCCAAAGTGATAGTCTTT 531501 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || ||||| || || || |||||||| Sbjct 531500 CCTGTCAAAGTCTTAACGAAAATCTGCAT 531472 Score = 140 bits (154), Expect = 3e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 || |||||||| | ||||| |||||||| || ||||| || | || |||||| |||| Sbjct 531455 AATACTAAATGTAAAGTAGACTCTTTTTGAATGTTGTAGTCAGAGAGAGTTCTACCATCC 531396 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 || ||||| || |||||||| || ||||| |||||||| || || || || || |||||| Sbjct 531395 TCTAATTGTTTTCCTGCAAAGATTAAACGTTGTTGATCAGGTGGGATTCCCTCCTTATCT 531336 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437 ||||| ||| || ||| | || | || || || | || ||||| | ||||| || Sbjct 531335 TGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGCTCAACTTCCAAAGTGATAGTC 531276 Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || ||||| || || || |||||||| Sbjct 531275 TTTCCTGTCAAAGTCTTAACGAAAATCTGCAT 531244 >seq1 Length=1277761 Score = 152 bits (168), Expect = 4e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||| | | ||| |||||||| | || || || || || |||||||| || | Sbjct 550149 CCGCCTCTAAGTCTTAATACTAAATGCAAAGTGGACTCCTTCTGGATATTGTAGTCAGAT 550208 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||||| |||| ||||||||||| || ||||| |||| |||||||||||| || ||| Sbjct 550209 AGAGTTCTACCATCTTCCAATTGCTTTCCAGCAAAGATCAGACGCTGTTGATCAGGAGGA 550268 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || || ||||| || || ||| |||||| | || | ||| || || | ||| ||| Sbjct 550269 ATACCCTCCTTATCCTGGATCTTTGCCTTTACATTCTCAATAGTATCGGAAGGTTCAACT 550328 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | |||| || || || ||||||||||| ||||| || ||||| Sbjct 550329 TCCAATGTGATGGTCTTTCCTGTTAAAGTTTTGACAAAAATTTGCAT 550375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396278313066426