Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001305455.2_202016-05- 09] 18 sequences; 9,104,817 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq11 172 1e-37 seq1 158 2e-33 seq16 154 3e-32 >seq11 Length=1218479 Score = 172 bits (190), Expect = 1e-37 Identities = 483/732 (66%), Gaps = 28/732 (4%) Strand=Plus/Plus Query 49649 TAATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCAC-AATTCATACCCAATA 49707 ||||||||| || |||||||||| |||||| | ||| || || | |||||||||| |||| Sbjct 83118 TAATCTATCAGCAACAAATTCAATATATTGGGCCAT-AAGTCTCGAATTCATACC-AATA 83175 Query 49708 ATTTAAATGGTAATGCA-TCATCAATAAATTCtttttctatttctacagcttgtttaatt 49766 | | || | || | ||| || ||| | | |||| | ||| ||||||| | || Sbjct 83176 AGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCTTTCAACTTCAACAGCTTCTGATATG 83235 Query 49767 atcataattatattattttt--tgataatttatatttaatatgattcgcatatattaaAC 49824 || | || || | | || ||||||| |||||| || ||||||||||| Sbjct 83236 AT--TTGTTGTACTCTAGGAGCTGGTAATTTAAATTTAAGGGCTTT---ATATATTAAAC 83290 Query 49825 ATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATC 49884 | |||||||||| ||| | ||| || || | | |||| ||||||| ||| || | || Sbjct 83291 AAGCAAAATCAGCATGGAGACCTTCATCACGACTAATAAGTTCATTAGAAAATGTGAGTC 83350 Query 49885 CTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATA 49944 | ||||| | ||| | |||||||||||||| |||| ||| |||| |||||| | | Sbjct 83351 CAGGCATAAGTCCACGTTTTTTAAGCCAAAAAATTGCACAAAAGCTACCAGAAAATAGAA 83410 Query 49945 TACCCTCGACACACGCA-AATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAT 50003 | || || ||| | || ||| | || |||||| | |||| || ||| ||| Sbjct 83411 TTCCTTCAACAG-CACAGAATCCAATAATTCTTTCAGCAAAAG---ATCGCTCAG--AAT 83464 Query 50004 --ATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTT 50061 ||||| || | ||||| |||||||| ||||| | || |||| || |||| Sbjct 83465 TCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTTACAGCTTCAATATGAGAAATTGCTT 83524 Query 50062 TAAATAATTCAttttt--ttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATA 50119 ||| | ||||| ||| | || | ||| ||||| Sbjct 83525 CAAAGAG--CATTTGACGTTCTTTAATTTCAGTAATATATCTATCAATAAGTAATGAATA 83582 Query 50120 CATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTGA 50179 ||||| ||||| ||| |||| |||||||| | |||| | ||| ||||| | Sbjct 83583 AGTTTCACTATGTATTTGTTCAATAGACATTTGAAAAGCATAATACATTCTAGCTTCCGG 83642 Query 50180 ATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGC 50239 || | ||| || ||| | | |||| || || |||||||||||| ||| Sbjct 83643 TATTTGTATTTCTCTAAGGAAATTTACTGCTAAGTTTTCCATAACAATACCATCACTTGC 83702 Query 50240 TGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCA 50299 || |||||||||||||| ||||| ||||||||| ||||| ||||| | | ||||||| Sbjct 83703 AGCAAAGAATGCTAAAACATATTTGATAAAATGTCTTTCAGGGTCTTTAAGACTTTCCCA 83762 Query 50300 AGATTCAAGATCGTTTGA--TAAATCTACTTCTTCTATTGTCCAAAATGATGCTACGGAT 50357 | | | ||| |||| || ||| | |||||| | |||||| || ||| | | | Sbjct 83763 ATCTCTAGTATC--TTGACTTAGATCAATTTCTTCAGTAACCCAAAACGACGCTTCAGCT 83820 Query 50358 TTTTTATACATT 50369 |||||||||||| Sbjct 83821 TTTTTATACATT 83832 >seq1 Length=1277761 Score = 158 bits (174), Expect = 2e-33 Identities = 179/240 (75%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 192303 AATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATA 192362 ||| | ||| |||||||| | |||||||||||| ||||| | ||| || |||||| || Sbjct 550142 AATTACACCGCCTCTAAGTCTTAATACTAAATGCAAAGTGGACTCCTTCTGGATATTGTA 550201 Query 192363 ATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATC 192422 ||||||| |||| |||| |||||||| || ||||||||||| | | ||||||||| Sbjct 550202 GTCAGATAGAGTTCTACCATCTTCCAATTGCTTTCCAGCAAAGATCAGACGCTGTTGATC 550261 Query 192423 AGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGA 192482 ||| || || || || ||||| || || || |||||||| |||| ||| || | Sbjct 550262 AGGAGGAATACCCTCCTTATCCTGGATCTTTGCCTTTACATTCTCAATAGTATCGGAAGG 550321 Query 192483 TTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTATT 192542 ||| ||||| | || ||||| || || ||||| ||||| | ||| || ||||| || || Sbjct 550322 TTCAACTTCCAATGTGATGGTCTTTCCTGTTAAAGTTTTGACAAAAATTTGCATCTTCTT 550381 >seq16 Length=842072 Score = 154 bits (170), Expect = 3e-32 Identities = 174/233 (75%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||||||||| | | ||||| |||||||| | |||||| || || |||||| Sbjct 531245 ATACCACCTCTAAGTCTCAGGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCA 531186 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| |||| || |||||||| || |||||||| || | |||||||||||| Sbjct 531185 GAGAGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGT 531126 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| |||||||| || || || ||||| || | |||||| | ||| Sbjct 531125 GGGATTCCTTCCTTATCTTGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGTTCA 531066 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||||| | ||| || || || || || || || |||| ||| |||||||| || Sbjct 531065 ACTTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCATATT 531013 Score = 154 bits (170), Expect = 3e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| || | ||||||||||||||||||| |||||| || || || ||| Sbjct 531473 ATACCACCTCTGAGTCTCAATACTAAATGTAAAGTAGACTCTTTTTGAATGTTGTAGTCA 531414 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| |||| || |||||||| || ||||||||||| | |||||||||||| Sbjct 531413 GAGAGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATTAAACGTTGTTGATCAGGT 531354 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| || |||||||| || || || ||||| || | |||||| | || Sbjct 531353 GGGATTCCCTCCTTATCTTGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGCTCA 531294 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | ||| || || || || || || || |||| || |||||||| Sbjct 531293 ACTTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACGAAAATCTGCAT 531244 Score = 136 bits (150), Expect = 8e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || |||||||| | | ||||| |||||||| | |||||| || || |||||| Sbjct 531701 ATTCCGCCTCTAAGTCTCAGGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCA 531642 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| |||| || |||||||| || |||||||| || | |||||||||||| Sbjct 531641 GAGAGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGT 531582 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| |||||||| || || || ||||| || | |||||| | || Sbjct 531581 GGGATTCCTTCCTTATCTTGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGCTCA 531522 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | ||| || || || || || || || |||| || |||||||| Sbjct 531521 ACTTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACGAAAATCTGCAT 531472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984479772954300