Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001305455.2_202016-05- 09] 18 sequences; 9,104,817 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq15 161 3e-34 seq11 127 6e-24 >seq15 Length=898173 Score = 161 bits (178), Expect = 3e-34 Identities = 355/521 (68%), Gaps = 17/521 (3%) Strand=Plus/Plus Query 288848 TCCTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTG 288907 |||||||||| || || | ||| |||||||| || ||||||| ||| | | |||||| Sbjct 745054 TCCTATCAAATCTTCCTGGACGTGTTAATGCGGGATCTAATACATCAGAACGATTTGTTC 745113 Query 288908 CTGCCAATACAACAA-TAGATTCGGTTTGCTTAAATCCATCCATACTTGTTAAAATTTGA 288966 |||| || || | | | ||| ||| ||||||||||||| | | ||| ||| Sbjct 745114 CTGCTAAAACTATTACTCCATTAT-TTTCAGTAAATCCATCCATTTCTACAAGAATCTGA 745172 Query 288967 TTAAGTGTTTGTTCCCTTTCATCATT---TGAACCTCTTGAATCACCCGAATC-GCTCCt 289022 ||||| || ||| || |||||||| |||| | | ||||| | || | Sbjct 745173 TTAAGAGTGCTTTCTCTCTCATCATTAGATGAAGCAGCAAATCCACCCCCTTTTGCACGC 745232 Query 289023 ttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGC 289082 ||| || ||||| ||||||||||| ||||| |||| | || ||||| || ||| || Sbjct 745233 TTTCTT-CCAACTGCATCAATTTCATCAATAAAAACAATACTTGGAGATAATTTTCTTGC 745291 Query 289083 AATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTC 289142 || ||||||||||||||| | ||| || | |||||| | || || | ||| || Sbjct 745292 CTGTGAAAATAATTCTCTTACTCTACTTGCACCCATTCCAACAAAAATCTCAATAAAATC 745351 Query 289143 AGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAG 289202 | | |||| | || |||| |||||| ||||| || || || || | |||| | Sbjct 745352 ACTTCCAGATATATAAAAAAATGGTACATTAGCTTCACCAGCAACAGCTTTTGCCAATAA 745411 Query 289203 TGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGC 289262 ||| ||||| || || |||||||| | |||| | | || ||||||| |||||| ||| Sbjct 745412 TGTTTTACCGGTACCTGGTGGTCCTACCAATAAAGCACCTTTTGGTATTTTTGCACCA-- 745469 Query 289263 AGA-CTT---ATATTTCTCAGGGCTC-TTTAAAAATTCTACAATTTCCTCAAGTTCATAT 289317 ||| ||| || ||| | || || ||||| |||||||| | ||| | | ||| | | Sbjct 745470 AGATCTTGAAATCTTTTT---GGATCTTTTAAGAATTCTACCAATTCATATATTTCTTGT 745526 Query 289318 TTTGCCTCATCACATCCTGCTACATCAGCAAAAGTAATATT 289358 || || || | ||| || | |||| ||| ||||||| Sbjct 745527 TTGGCTTCTTTCATTCCAGCAATATCACTAAATTTAATATT 745567 >seq11 Length=1218479 Score = 127 bits (140), Expect = 6e-24 Identities = 286/423 (68%), Gaps = 14/423 (3%) Strand=Plus/Minus Query 154538 ATAATAAATACCTGTCTTTAGCCCTGCCCGCCAACCATAGAAATGCATATTTGTTAATGA 154597 ||||||||| ||||| ||||| ||| ||||||||| ||||||||| || ||| Sbjct 362999 ATAATAAATGCCTGTTTTTAGACCTTTTTTCCAACCATAAAAATGCATAGATGATAACTT 362940 Query 154598 TTTAGGCTCTGGGTCTTCCATCCATAAAT--TCATACTCTGCGATTGGCAAATATATAAT 154655 | | | | | |||||| || ||| ||| | |||||||| |||| |||| Sbjct 362939 TGCAAAGTTAGCATTTTCCAT--ATGAATGTTCAAAGATTGCGATTGACAAACATATGGA 362882 Query 154656 CCGCGGTCACGAGCCATATCAATTAGTGTCTTCATTTTAATTTCCCATACAATCTTGTAT 154715 || | || |||||||||||||| |||||| ||||||||||||||| |||| || Sbjct 362881 CCCCTATCTGCAGCCATATCAATTACTGTCTTTTGCTTAATTTCCCATACAGTCTTATAA 362822 Query 154716 TTCTCTTTAATATGTTCTGGTAGTCCATCAATATATTGAACGCTTCCCTTGTTGGCAATA 154775 ||| |||| ||| || | | | |||| ||||| || || || || |||||| Sbjct 362821 AGCTCGCGTATATCTTCCGGAATTGTAAGTATATTTTGAATACTGCCATTATTTGCAATA 362762 Query 154776 ATATTGTTCTTGACGCTTTCATCCCATAGTTTTAGTGCCAGTAGTTCATCGACCAGAT-- 154833 ||||| | ||| | || |||||||||| || | |||| |||| | || || Sbjct 362761 ATATTCTGCTTAAGCCTATCATCCCATAACCCAAGCTCTAGTAAATCATTTAGCAAATGC 362702 Query 154834 --ATTTATTAACCATCGTAAATTCACCCGCCAGAGTTTTCCTGCTG-TAAATATTACTTG 154890 ||||| || || | || ||||| | || | | | | || ||||| || | Sbjct 362701 GGATTTACTA--CAAAG--AACTCACCAGATAGTACTCTAC-GATGATAAATGTTCGAGG 362647 Query 154891 TAATTGGCTCAAAGCACTCGTTATTACCTAAAATCTGGCTTGTGCTTGCTGTAGGCATGG 154950 ||| ||||||||| | ||| || ||||||||||| || ||| |||||| ||||| | Sbjct 362646 TAAATGGCTCAAAACTCTCATTGTTACCTAAAATTTGCGAAGTGGATGCTGTTGGCATTG 362587 Query 154951 GAG 154953 ||| Sbjct 362586 GAG 362584 Score = 113 bits (124), Expect = 1e-19 Identities = 344/529 (65%), Gaps = 7/529 (1%) Strand=Plus/Minus Query 155979 CCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATAC 156038 ||||||||||||| | || | || || ||| |||| || ||||||| ||| Sbjct 361735 CCGTGATTCTTCCTGATTTCAATAAACTCTACAACATCAACGTGCCACGGCTCCAAATAA 361676 Query 156039 ATAGCAAAACTACCATTCCTCTTGCC---ACCCTGATCTACATACCGAGCAGTCTTATTG 156095 || |||| ||| || | ||| || ||| ||||| | ||||| |||||| | ||| Sbjct 361675 ATTGCAATGGCACCTTTACGCTTCCCTCCACCTTGATCAATATACCTAGCAGTGTCATTA 361616 Query 156096 AAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAA 156155 | || | ||||| ||||| | ||||| || | ||||| ||||| ||||||| ||| Sbjct 361615 TAAACGCGCAGCATCGGAATTAATCCATTAGATCTCCCATTTGTTCCTCGAATATATGAA 361556 Query 156156 CCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGA 156215 |||| | | || |||| | | |||| |||||| | ||| ||| | Sbjct 361555 CCAGTTCCTCTAATATTACTCACTGCCACCCCAAGACCACCCGCAGTCTTACTAATGTTT 361496 Query 156216 GCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGA 156275 ||||||| ||| || | || ||||| | || ||||| ||| || |||| | Sbjct 361495 GCGCATTTAGTTAGTGTGTCAAAGATACCGTTTATTGAATCTTCTGGAATCCTGAGTAAA 361436 Query 156276 TAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGA 156335 | || || | |||||||||||| || || | || || ||||| |||||||||||| Sbjct 361435 AAACAAGATGACATTTGAGGTCGTGGAGTGCCTGAATTAAAGAGTGTGGGTGTTGCATGA 361376 Query 156336 ATAAAATACTTATTAGACATATAATCGTATGTCTC--CTTAATCTTCTCAAGATTAGACC 156393 ||||||| || | || | | || ||||| || | | || |||| || | | Sbjct 361375 GTAAAATATTTTTGCGATAACAACTCATATGTTTCAAGTGCAGCT--TCAATATCACCAC 361318 Query 156394 CGTGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCAT 156453 ||||||| |||||||| |||| | ||| || || | || |||| | Sbjct 361317 AATGAATACCACAAGAGACCCGCATCAGAAGATGTTGTGGTCTTTCCACAACTTTGTTGT 361258 Query 156454 CAATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATAATC 156502 ||||| ||||| || | | ||| |||||||| || | |||||||| Sbjct 361257 CAATTTTAAGAAGATAGGATCTTTCTAGAGTTTTGAAGGCAAAATAATC 361209 Score = 89.7 bits (98), Expect = 2e-12 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 448899 GAAATCAAGAAGGCATATAAACGACTCGCAATTAAACATCATCCTGATAAAAATCCAGAT 448958 ||||| |||||| |||||| | | | ||| | ||| |||||||||||||| || ||| Sbjct 530480 GAAATAAAGAAGTCATATAGAAAATTAGCATTAAAATGGCATCCTGATAAAAACCCTGAT 530421 Query 448959 AATAAAGCAGAGGCAGAGGAGAAATTCAAAGAGATTTCTCAAGCTTATGAAATT 449012 |||| || ||| || ||||||| |||||| ||||| | ||||||| ||| || Sbjct 530420 AATAGAGAAGAAGCTGAGGAGATGTTCAAAAAGATTGCAGAAGCTTACGAAGTT 530367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471817260562066