Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001305455.2_202016-05- 09] 18 sequences; 9,104,817 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq16 118 8e-22 seq1 89.7 4e-13 >seq16 Length=842072 Score = 118 bits (130), Expect = 8e-22 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 ||| || || || | ||||| |||||||||||||| ||||| | | || | | ||| Sbjct 531228 CAGGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGAGAGAGTTCTACCATC 531169 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || | |||||| || ||| | ||||| | ||| ||||| || || || || || || || Sbjct 531168 CTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGGATTCCTTCCTTATC 531109 Query 29694 TTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAG 29752 ||| ||| |||| || ||| | || | || || ||| |||| ||||| | ||| |||| Sbjct 531108 TTG-AATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGTTCAACTTCCAAAGTGATAG 531050 Query 29753 TTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 | || || || || || |||||||| |||||||| || Sbjct 531049 TCTTTCCTGTCAAAGTCTTAACAAAAATCTGCATATT 531013 Score = 109 bits (120), Expect = 4e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 ||| || || || | ||||| |||||||||||||| ||||| | | || | | ||| Sbjct 531684 CAGGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGAGAGAGTTCTACCATC 531625 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || | |||||| || ||| | ||||| | ||| ||||| || || || || || || || Sbjct 531624 CTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGGATTCCTTCCTTATC 531565 Query 29694 TTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAG 29752 ||| ||| |||| || ||| | || | || || ||| | || ||||| | ||| |||| Sbjct 531564 TTG-AATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGCTCAACTTCCAAAGTGATAG 531506 Query 29753 TTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || || || || || ||||| || |||||||| Sbjct 531505 TCTTTCCTGTCAAAGTCTTAACGAAAATCTGCAT 531472 Score = 102 bits (112), Expect = 6e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 || ||||| | || || |||||||||||||| || || | | || | | ||| || Sbjct 531452 ACTAAATGTAAAGTAGACTCTTTTTGAATGTTGTAGTCAGAGAGAGTTCTACCATCCTCT 531393 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 | |||||| || ||| | || || | ||| ||||| || || || ||||| || ||||| Sbjct 531392 AATTGTTTTCCTGCAAAGATTAAACGTTGTTGATCAGGTGGGATTCCCTCCTTATCTTG- 531334 Query 29698 AATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756 ||| |||| || ||| | || | || || ||| | || ||||| | ||| ||||| || Sbjct 531333 AATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGCTCAACTTCCAAAGTGATAGTCTT 531274 Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || ||||| || |||||||| Sbjct 531273 TCCTGTCAAAGTCTTAACGAAAATCTGCAT 531244 >seq1 Length=1277761 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 || ||||| | ||||| || || || || || || || | | || | | ||| || Sbjct 550167 ACTAAATGCAAAGTGGACTCCTTCTGGATATTGTAGTCAGATAGAGTTCTACCATCTTCC 550226 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 | ||| || |||||| | |||| | || ||||| || ||||||||||| || || || Sbjct 550227 AATTGCTTTCCAGCAAAGATCAGACGCTGTTGATCAGGAGGAATACCCTCCTTATCCTGG 550286 Query 29698 AATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTG 29757 | ||| || ||| | || | ||| || ||| |||| ||||| | || || || || Sbjct 550287 ATCTTTGCCTTTACATTCTCAATAGTATCGGAAGGTTCAACTTCCAATGTGATGGTCTTT 550346 Query 29758 CCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || ||||| ||||| ||||| || ||||| || Sbjct 550347 CCTGTTAAAGTTTTGACAAAAATTTGCATCTT 550378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385219115492538