Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001305455.2_202016-05- 09] 18 sequences; 9,104,817 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq11 141 1e-28 >seq11 Length=1218479 Score = 141 bits (156), Expect = 1e-28 Identities = 897/1415 (63%), Gaps = 52/1415 (4%) Strand=Plus/Plus Query 104214 TGGAAACCCCACAGTACATGTTC--ATGCGCGTGGCCATCGGTATTCATGGGGAAGACAT 104271 |||||| ||||| |||| ||| ||||| || | ||||||||| | | || || Sbjct 361270 TGGAAAGACCACA--ACATCTTCTGATGCGGGTCTCTTGTGGTATTCATTGTGGTGATAT 361327 Query 104272 TGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGG-TATGTTCATTCACGCAACAC 104330 ||| ||| | || ||||| || | | || ||| ||| || | ||| ||||||| Sbjct 361328 TGAAGCTGCACTTGAAACATATGAGTTGTTATCGCAAAAATATTTT-ACTCATGCAACAC 361386 Query 104331 CAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCA 104390 | || ||||| ||| | || || ||| |||| |||||||| ||| || | || | Sbjct 361387 CCACACTCTTTAATTCAGGCACTCCACGACCTCAAATGTCATCTTGTTTTTTACTCAGGA 361446 Query 104391 ACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCA- 104449 || || ||||| |||||||||| || || || || | || |||||| | | Sbjct 361447 TTCCAGAAGATTCAATAAACGGTATCTTTGACACACTAACTAAATG--CGCAAACATTAG 361504 Query 104450 -AAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTAT 104508 ||| || || ||| ||||| || | | || | |||| | | || ||| Sbjct 361505 TAAGACTGCGGGTGGTCTTGGGGTGGCAGTGAGTAATATTAGAGGAACTGGTTCATATAT 361564 Query 104509 TCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCAC 104568 ||| || |||||||| ||| |||| | ||||| ||||| ||||| | ||| | ||| Sbjct 361565 TCGAGGAACAAATGGGAGATCTAATGGATTAATTCCGATGCTGCGCGTTTATAATGACAC 361624 Query 104569 AGCGCGCTATGTAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGA 104625 || | ||| | |||||| ||| | || || || | || ||| | ||| | || Sbjct 361625 TGCTAGGTATATTGATCAAGGTGGAGGGAAGCGTAAAGGTGCCATTGCAATTTATTTGGA 361684 Query 104626 GCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGA 104685 ||| ||||||| ||| | | ||||| |||| | | || || || | || || Sbjct 361685 GCCGTGGCACGTTGATGTTGTAGAGTTTATTGAAATCAGGAAGAATCACGGAAAGGAAGA 361744 Query 104686 GGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGT 104745 | | | || ||||||||||| | || || ||| |||| ||||| |||||| | ||||| Sbjct 361745 GATGAGATGTCGCGATCTCTTTCCTGCCCTTTGGGTTCCTGATCTGTTCATGGAAAGAGT 361804 Query 104746 TGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGA-CAAGGCACCTGGTCTCTCCGATG 104804 |||| || | ||||| |||| | || ||||| || ||| || | |||| Sbjct 361805 TGAGAAGGATCAAGATTGGACTCTAATGTGCCCAGATGAATGCA-GGGGATTGCAAGATG 361863 Query 104805 CCGTGGGTGAGGAGTTT--GAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGAC 104862 ||| || || ||| |||| || || | |||| ||| || |||| || | | Sbjct 361864 TTTGGGGCGATGATTTTAAGAAG--CTATATGAAGAGTATGAGAAACAAGGCCGTGGAAG 361921 Query 104863 TGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCA-AGTCTCAAACCGAGACTG 104921 ||| || ||| || || | | || ||| | || |||||| ||||| | Sbjct 361922 GAAAACGATGAAAGC-GCAGAAACTTTGGTTCTTAATCTTACAGGCTCAAATTGAGACGG 361980 Query 104922 GTACACCATACATGCTTTACAAAGACGCCTGTAACCA-AAAGAGTAATCAAAAGAATTTG 104980 | ||||||| || ||| ||||| | ||| || | || ||||| || || |||||| Sbjct 361981 GGACACCATTTATTTGTTATAAAGATG-CTGCAAATAGCAAAAGTAACCAGAAAAATTTG 362039 Query 104981 GGTGTGATCAAGAGTTCC----AATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGA 105036 | || | | ||| | || | || ||||||||| | |||| || || || Sbjct 362040 G----GAACTATTGTTTCAAGTAACTTATGCACAGAAATCATAGAATACACTAGCACGGA 362095 Query 105037 TGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGAC 105096 || || || ||||| || || || || | || || || | || ||| | | | Sbjct 362096 CGAAGTTGCCGTCTGTAATCTGGCGTCTATTGGCCTTCCAAAATTCGTTGATAAAAATAA 362155 Query 105097 AAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAA 105156 ||||| ||||||| ||| || | | ||||||||||| | || | || | || Sbjct 362156 CAAGACGTTTGATTTTGATAAGTTAAAAGAAGTTACGAAGGTGATTACGAGGAATTTGAA 362215 Query 105157 CAGAGTTATTGA---TAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAG 105213 | | | ||||| | || ||| || | | ||| || | ||||| ||| | || Sbjct 362216 TAAATTGATTGACGTTGGATATTATT--CTCTCAAAGAGTG-TAAAAAATCGAATTTAAG 362272 Query 105214 ACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGA-TGTAT--TCATTCTTTGTCG 105270 ||| |||||| | || | || |||| || ||||| || ||| | | || ||| || Sbjct 362273 ACATCGTCCATTGGGGATTGGCATTCAAGGGCTCGCAGACTGTTTTATGATGCTTCGTAT 362332 Query 105271 CCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTA 105330 | | | || || || | ||| ||| | | ||| | || ||||| || || Sbjct 362333 GC---CGTACGAGTCTGAGGGAGCTAAGAAGTTAAATAAACAAATTTTTGAAGTTATCTA 362389 Query 105331 TCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTT 105390 | | || ||||| || || || | ||| | ||||| | || ||||| ||||| | Sbjct 362390 TTATGCAGCTCTCGACGCTAGCTGTGAGCTTGCAGAAAAATACGGGCCATACGAAACATA 362449 Query 105391 TGAGGGTTCTCCAGCTTCACAAGGGGTGCTT--CAATTTGATATGTGGGAAGGTGAGACC 105448 | ||||| || || | | |||| || |||||||||||||||| | || | ||| Sbjct 362450 TTCCGGTTCGCCTGC--GAGTAAGGGTATTTTACAATTTGATATGTGGGGA-GTTACACC 362506 Query 105449 AAGCT----TCACTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCG 105504 | || | | || ||||| || || || | || | | ||| |||| Sbjct 362507 AGACTCTGGACTTTGTGATTGGGATTTGCTTAAAGATAGGATTTCCAAACATGGTATTCG 362566 Query 105505 TAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAA 105564 ||| ||| | || |||||||||||||||| ||||| | ||||| || ||||| || Sbjct 362567 TAATTCTCTATTAATATCTCCAATGCCAACAGCATCCACTTCGCAAATTTTAGGTAACAA 362626 Query 105565 TGAATGCTTTGAACCCTACACGACGAACATCTATC 105599 ||| | ||||| || | || ||||||| |||| Sbjct 362627 TGAGAGTTTTGAGCCATTTACCTCGAACATTTATC 362661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260668766320