Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001305455.2_202016-05- 09] 18 sequences; 9,104,817 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq16 181 2e-40 seq1 152 1e-31 >seq16 Length=842072 Score = 181 bits (200), Expect = 2e-40 Identities = 177/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| | || | | ||| | |||||| || |||||||| ||||||||||||| Sbjct 531471 ACCACCTCTGAGTCTCAATACTAAATGTAAAGTAGACTCTTTTTGAATGTTGTAGTCAGA 531412 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || | |||||||||| |||||| || |||||||| ||||||||||| ||| || Sbjct 531411 GAGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATTAAACGTTGTTGATCAGGTGG 531352 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || |||||||| ||||| |||||||| || || | || || || || |||| || || Sbjct 531351 GATTCCCTCCTTATCTTGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGCTCAAC 531292 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| | |||||| ||||| || ||||||||||||||||| |||||||| Sbjct 531291 TTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACGAAAATCTGCAT 531244 Score = 178 bits (196), Expect = 3e-39 Identities = 163/206 (79%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 282897 TGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGT 282956 ||||| ||| |||||||| |||||||| |||| || || | |||||||||| |||| Sbjct 531218 TGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGAGAGAGTTCTACCATCCTCTAATTGT 531159 Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || |||||||||||||||||||| ||| || || || ||||| ||||| |||||| Sbjct 531158 TTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGGATTCCTTCCTTATCTTGAATCTTT 531099 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 || || || | || || || || |||| ||| ||||| | |||||| ||||| || ||| Sbjct 531098 GCCTTAACATTCTCAATTGTATCTGAAGGTTCAACTTCCAAAGTGATAGTCTTTCCTGTC 531039 Query 283077 AAAGTCTTAACGAATATCTGCATTTT 283102 ||||||||||| || |||||||| || Sbjct 531038 AAAGTCTTAACAAAAATCTGCATATT 531013 Score = 178 bits (196), Expect = 3e-39 Identities = 161/203 (79%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 282897 TGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGT 282956 ||||| ||| |||||||| |||||||| |||| || || | |||||||||| |||| Sbjct 531674 TGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGAGAGAGTTCTACCATCCTCTAATTGT 531615 Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || |||||||||||||||||||| ||| || || || ||||| ||||| |||||| Sbjct 531614 TTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGGATTCCTTCCTTATCTTGAATCTTT 531555 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 || || || | || || || || |||| || ||||| | |||||| ||||| || ||| Sbjct 531554 GCCTTAACATTCTCAATTGTATCTGAAGGCTCAACTTCCAAAGTGATAGTCTTTCCTGTC 531495 Query 283077 AAAGTCTTAACGAATATCTGCAT 283099 |||||||||||||| |||||||| Sbjct 531494 AAAGTCTTAACGAAAATCTGCAT 531472 >seq1 Length=1277761 Score = 152 bits (168), Expect = 1e-31 Identities = 162/214 (76%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 282890 TACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTC 282949 ||| | ||| || ||| || || ||||| |||||||||| || || | ||||| || Sbjct 550166 TACTAAATGCAAAGTGGACTCCTTCTGGATATTGTAGTCAGATAGAGTTCTACCATCTTC 550225 Query 282950 TAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTG 283009 | ||| || || |||||||||| ||| ||||| ||| |||||||||||||| || || Sbjct 550226 CAATTGCTTTCCAGCAAAGATCAGACGCTGTTGATCAGGAGGAATACCCTCCTTATCCTG 550285 Query 283010 GATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTT 283069 ||||||||| ||||| | || ||||| || |||| ||| ||||| | ||||| ||||| Sbjct 550286 GATCTTTGCCTTTACATTCTCAATAGTATCGGAAGGTTCAACTTCCAATGTGATGGTCTT 550345 Query 283070 ACCCGTCAAAGTCTTAACGAATATCTGCATTTTC 283103 || || ||||| || || || || ||||| ||| Sbjct 550346 TCCTGTTAAAGTTTTGACAAAAATTTGCATCTTC 550379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046738958595772