Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001305455.2_202016-05- 09] 18 sequences; 9,104,817 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq11 269 3e-67 >seq11 Length=1218479 Score = 269 bits (298), Expect = 3e-67 Identities = 596/877 (68%), Gaps = 55/877 (6%) Strand=Plus/Plus Query 23219 TTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTCTAATGATATATTTT 23278 |||||||||| ||||| | ||||||| || || || ||||| | | ||| ||| | Sbjct 83000 TTTGATATTCACCAACTCTCTTTTCGAAGAAGTTAGTTTTACCTTGAAGTGAAATAAGGT 83059 Query 23279 CCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTTACATGAT--AATTCCTTTAA 23336 |||| ||||||| ||||||||| || || | ||| | || || | || Sbjct 83060 CCATCCAATCAAAAGGATTAGAAACGTTGTAGATT--TTTGGAATATCCAAGGCA---AA 83114 Query 23337 AAGC---CTATCTGCTACAAATTCAATATATTGACACATCAAATCAT-AGTTTATACCTA 23392 ||| ||||| || ||||||||||||||||| ||| || || | || ||||| | Sbjct 83115 AAGTAATCTATCAGCAACAAATTCAATATATTGGGCCAT-AAGTCTCGAATTCATACCAA 83173 Query 23393 TTAGTTTTACTGGAATCGCATCATATAAGAATAGTTT--TTCAATGGAAACAGCATCTTT 23450 | || | || |||| | ||| | ||||| ||||| ||||| |||||| ||| Sbjct 83174 TAAGATCAACAGGAAGAGAGTCACA-AAGAA-AGTTTCTTTCAACTTCAACAGCTTCTGA 83231 Query 23451 AATTATTTGAACAATAACTTCTTCACTAGGTG--GATATTTTAAATAC-------TTAAA 23501 || ||||| || | | ||||| | | || ||||||| ||| | Sbjct 83232 TATGATTTG---------TTGTACTCTAGGAGCTGGTAATTTAAATTTAAGGGCTTTATA 83282 Query 23502 CAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAA 23561 | |||||| ||||||||| ||| || |||||||| | |||||| | |||||||||||| Sbjct 83283 TATTAAACAAGCAAAATCAGCATGGAGACCTTCATCACGACTAATAAGTTCATTAGAAAA 83342 Query 23562 TGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGAT-CCGG 23620 ||| | ||| ||||| | ||| |||||||||| |||||| |||||| |||| | | || | Sbjct 83343 TGTGAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAATTGCA-CAAAAGCTACCAG 83401 Query 23621 AAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTT-GCATTA 23679 |||| | ||| || |||||||| || | | || | | | |||| | | || Sbjct 83402 AAAATAGAATTCCTTCAACAGCACAGAATCCAATAATTCTTTCAGCAAAAGATCGC---- 83457 Query 23680 TAATCAGAA---ATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTT 23736 |||||| |||||||| ||| ||| | || ||| ||||||| ||||| Sbjct 83458 ---TCAGAATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTTACAGCTTCAATATGA 83514 Query 23737 TCAATTGCTTTTAAGAGAAAAGTTTT---TTCTTCATTATCTGTTATATATGTATCAATT 23793 |||||||| ||||| | ||| ||||| | | || || |||||| ||||||| Sbjct 83515 GAAATTGCTTCAAAGAGCA---TTTGACGTTCTTTAATTTCAGTAATATATCTATCAATA 83571 Query 23794 AGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACAT 23853 ||||| ||| ||||| ||| || | |||||||| || ||||| ||||| | | Sbjct 83572 AGTAATGAATAAGTTTCACTATGTATTTGTTCAATAGACATTTGAAAAGCATAATACATT 83631 Query 23854 CTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATA 23913 |||||||| | | ||| | || ||| || || ||||| ||||| |||||||| Sbjct 83632 CTAGCTTCCGGTATTTGTATTTCTCTAAGGAAATTTACTGCTAAGTTTTCCATAACAATA 83691 Query 23914 CCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGAT 23973 |||||||| ||||||||||| || | ||||||||| ||||||||||||||| || | Sbjct 83692 CCATCACTTGCAGCAAAGAATGCTAAAACATATTTGATAAAATGTCTTTCA-GGGTCTTT 83750 Query 23974 AA-TTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACT 24032 || ||| |||||| || |||||| || ||||| ||| ||| |||||| Sbjct 83751 AAGACTTTCCCAATCTCTAGTATCTTGACTTAGATCAATTTCTTCAGTAACCCAAAACGA 83810 Query 24033 TGCCAAGGCACGCTTATACATTAGCCAAATATCATTA 24069 || || ||||||||| ||||||||| ||| Sbjct 83811 CGCTTCAGCTTTTTTATACATTGACCAAATATCTTTA 83847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521487882665200