Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001305475.1_202015-10- 01] 18 sequences; 9,085,686 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq2 253 2e-62 >seq2 Length=1258884 Score = 253 bits (280), Expect = 2e-62 Identities = 594/874 (68%), Gaps = 37/874 (4%) Strand=Plus/Plus Query 13914 TTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTT 13973 |||||||||||| |||||| ||||| ||||||||||||||||||| ||||| ||| | Sbjct 87481 TTTGATATTCACCAACTCTCTTTTCGAAGAAGTTAGTTTTACCTTGAAGTGAAATAAGGT 87540 Query 13974 CCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTA 14033 |||| ||||||| ||||| | | | | ||| | | | | | || |||| Sbjct 87541 CCATCCAATCAAAAGGATTAGAAACGTTGTAGATTTTTGGAATATCCAAGGCAAAAAGTA 87600 Query 14034 ATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCAC-AATTCATACCTATTAGT 14092 ||||||| |||| || ||||||||||| | ||| || || | |||||||||| || || Sbjct 87601 ATCTATCAGCAACAAATTCAATATATTGGGCCAT-AAGTCTCGAATTCATACCAATAAGA 87659 Query 14093 TTTACAGGAATTATATTGGTTAA-AAATTCTTTTTCTATAGACACAGCCTCGTTTATAAT 14151 | ||||||| | | | || ||| | | |||| | ||||| || ||| || Sbjct 87660 TCAACAGGAAG-AGAGTCACAAAGAAAGTTTCTTTCAACTTCAACAGCTTCTGATATGAT 87718 Query 14152 AATCGTAATAATTTCATTAGAAGGAGG------ATATTTTAGATGTTTAAAAATTAAACA 14205 | || || | | || || || | |||| || |||| | |||||||| Sbjct 87719 --TTGTTGTACTCT----AGGAGCTGGTAATTTAAATTTAAGGGCTTTATATATTAAACA 87772 Query 14206 CGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC 14265 ||||||||| ||| || || ||||| | |||||||||||| || |||||||| | ||| Sbjct 87773 AGCAAAATCAGCATGGAGACCTTCATCACGACTAATAAGTTCATTAGAAAATGTGAGTCC 87832 Query 14266 TGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT-CCGGAAAAGAATA 14324 ||||| | ||| |||||||| | |||||| |||||| | || | | || ||||| | | Sbjct 87833 AGGCATAAGTCCACGTTTTTTAAGCCAAAAAATTGCA-CAAAAGCTACCAGAAAATAGAA 87891 Query 14325 TTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATA 14384 |||| ||||| ||| || | || | || ||| |||| ||| | ||| | Sbjct 87892 TTCCTTCAACAGCACAGAATCCAATAATTCTTTCAGCAAAAGATCGCTCAGAATTC---A 87948 Query 14385 TCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAA 14444 ||||||| | |||||||| | ||| ||||| | | || || ||| || | || Sbjct 87949 TCCATTTAGTTGCCCATTCTGCTTTCTTTTTTACAGCTTCAATATGAGAAATTGCTTCAA 88008 Query 14445 ATA-AATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATT 14503 | | || | | | |||||| | | ||| ||| ||||||||||||| ||| || Sbjct 88009 AGAGCATTTGACGT-TCTTTAATTTCAGTAATATATCTATCAATAAGTAATGAATAAGTT 88067 Query 14504 TCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCAT 14563 ||| ||||| | ||| |||| || |||||| ||||| | ||||||||| | | Sbjct 88068 TCACTATGTATTTGTTCAATAGACATTTGAAAAGCATAATACATTCTAGCTTCCGGTATT 88127 Query 14564 TGTA--CCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTG 14621 |||| |||| || ||| || | || || ||||| |||| ||||||||||| || | Sbjct 88128 TGTATTTCTCTAAGGAAA--TTTACTGCTAAGTTTTCCATAACAATACCATCACTTGCAG 88185 Query 14622 CAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCA---TTGCTGAGTTTTTTCC 14678 |||| ||||| || | | ||| ||||| || || |||| | | || ||| || Sbjct 88186 CAAAGAATGCTAAAACATATTTGATAAA--ATGTCT-TTCAGGGTCTTTAAGACTTTCCC 88242 Query 14679 AATCGGCTA-AATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTA-GCAACAGC 14736 |||| ||| ||| | | ||||| | ||| || | | || ||||| | || |||| Sbjct 88243 AATC-TCTAGTATCTTGACTTAGATCAATTTCTTC-AGTAACCCAAAACGACGCTTCAGC 88300 Query 14737 TTTTTTATACATTACCCATATTTCTTTATATAAT 14770 ||||||||||||| ||| || |||||| |||| Sbjct 88301 TTTTTTATACATTGACCAAATATCTTTAATTAAT 88334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482345491472240