Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001305475.1_202015-10- 01] 18 sequences; 9,085,686 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq2 331 1e-85 >seq2 Length=1258884 Score = 331 bits (366), Expect = 1e-85 Identities = 1203/1856 (65%), Gaps = 40/1856 (2%) Strand=Plus/Minus Query 78717 TGTGAATTGAATGGGAGCGGAT-GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTA 78775 ||| ||||| ||||| ||| | ||| || || | || ||| || || || ||||||| Sbjct 371294 TGTAAATTGTATGGG-GCGTGTCGCGCTTTGGGTCCTTAAATAATAAATGCCTGTTTTTA 371236 Query 78776 GACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTA 78835 |||| |||| || || ||||||||| | || || | | | | | || | | | Sbjct 371235 GACCTTTTTTCCAACCATAAAAATGCATAGATGATAACTTTGCAAAGTTAGCATTTTCCA 371176 Query 78836 TATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTA 78895 |||| || |||| |||||| |||| | | | ||||| ||||||||||| | | Sbjct 371175 TATGAATGTTCAAAGATTGCGATTGACAAACATATGGACCCCTATCTGCAGCCATATCAA 371116 Query 78896 TGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA-CTCGCTTAATATCTTCTGGA 78954 | | |||||||| ||||||||| | ||| ||||||| ||||| | |||||||| ||| Sbjct 371115 TTACTGTCTTTTGCTTAATTTCCCATACAGTCTTATAAAGCTCGCGT-ATATCTTCCGGA 371057 Query 78955 A-GGT--TTGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCA 79011 | || | |||| ||||| ||| || ||| ||||| | | ||| | | ||| Sbjct 371056 ATTGTAAGTATATTTTGAATACTGCCATTATTTGCAATAATATTCTGCTTAAGCCTATCA 370997 Query 79012 TTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCT 79071 | |||||| ||| |||| | | || | ||||||||| ||||| || || Sbjct 370996 TCCCATAACCCAAGCTCTAGTAAATCATTTAGCAAATGCGGATTTACTACAAAGAACTCA 370937 Query 79072 CCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTT 79131 ||||| | |||||| ||| ||||| || |||| |||| || | ||||| || Sbjct 370936 CCAGATAGTACTCTACGATGATAAATGTTCGAGGTAAATGGCTCAAAACTCTCATTGTTA 370877 Query 79132 CCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGA 79191 || |||||||| | ||| ||||| |||||||| || | | |||| | ||| | || | Sbjct 370876 CCTAAAATTTGCGAAGTGGATGCTGTTGGCATTGGAGATATTAATAGAGAATTACGAATA 370817 Query 79192 CCGTATGATCTG--ATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGA---CGGGA 79246 || ||| | | || ||||||| || | |||||||| ||||| |||| || Sbjct 370816 CC--ATGTTTGGAAATCCTATCTTTAAGCAAATCCCAATCACAAAGTCCAGAGTCTGGTG 370759 Query 79247 CAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTT 79306 ||| ||| | |||| |||||| |||||| ||||| || || || | ||||||| Sbjct 370758 TAACTCCCCACATATCAAATTGTAAAATACCCTTACTCGCAGGCGAACCGGAATATGTTT 370699 Query 79307 CATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGG 79366 | || || || | ||||| || | ||||| || || || | ||| | ||||| || Sbjct 370698 CGTATGGCCCGTATTTTTCTGCAAGCTCACAGCTAGCGTCGAGAGCTGCATAATAGATAA 370639 Query 79367 TTTCGAAAATCTTCTTATTGAGATCTTGTGCTTC--TAGGCTATCAAATGG-ATAATTTA 79423 ||| ||||| | ||||| | | | ||| | || | || | || ||| | Sbjct 370638 CTTCAAAAATTTGTTTATTTAACTTCTTAGCTCCCTCAGAC--TCGTACGGCATA--CGA 370583 Query 79424 AG-AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTA 79482 || | ||||| |||||| | ||||||| ||||| || | || | |||||| | Sbjct 370582 AGCATCATAAAACAGTCTGCGAGCCCTTGAATGCCAATCCCCAATGGACGATGTCTTAAA 370523 Query 79483 TTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTC 79542 || || ||| | ||| | || |||||| || || || | |||||| | |||| Sbjct 370522 TTCGATTTTTTACACTCTTTGAGAGAATAATATCCAACGTCAATCAATTTATTCAAATTC 370463 Query 79543 CTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTCCATCTA---TT 79599 || || || || || || |||| || ||||||||| |||| || || Sbjct 370462 CTCGTAATCACCTTCGTAACTTCTTTTAACTTATCAAAATCAAA-CGTCTTGTTATTTTT 370404 Query 79600 ACAAAC--ATGTTCAACG--CGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATC 79655 | ||| || || | | | | ||| ||||||||||| ||||| || || | | Sbjct 370403 ATCAACGAATTTTGGAAGGCCAATAGACGCCAGATTACAGACGGCAACTTCGTCCGTGCT 370344 Query 79656 CGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTG 79715 | |||| ||| ||||| ||||| | |||||| | ||| ||||| ||||||| || Sbjct 370343 AGTGTATTCTATGATTTCTGTGCATAAGTTACTTGAAACAATAGTTCCCAAATTTTTCTG 370284 Query 79716 ATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTG 79775 ||||| || | || ||||| |||||| ||| || || || || || ||||| || Sbjct 370283 GTTACTTTTGCTATTTGCAGCATCTTTATAACAAATAAATGGTGTCCCCGTCTCAATTTG 370224 Query 79776 AGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATAGACTTGTATCTCTTTT 79834 || | || || ||| | | || | || || || | | | | || Sbjct 370223 AGCCTGTAAGATTAAGAACCA-AAGTTTCTGCGCTTTCATCGTTTTCCTTCCACGGCCTT 370165 Query 79835 CTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAG 79894 | | || || | | ||||| | || || || ||||||||||| | ||||| Sbjct 370164 GTTTCTCATACTCTTCATATAGCTTCTTAAAATCATCGCCCCAAACATCTTGCAATCCCC 370105 Query 79895 GACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGA 79954 ||||| || || ||||| | | ||| ||| ||| | || |||| || ||| || | Sbjct 370104 TGCATTCATCTGGGCACATTAGAGTCCAATCTTGATCCTTCTCAACTCTTTCCATGAACA 370045 Query 79955 GATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTAT 80014 ||||||||| |||||| || ||| ||||| | ||| ||| || ||||| || Sbjct 370044 GATCAGGAACCCAAAGGGCAGGAAAGAGATCGCGACATCTCATCTCTTCCTTTCCGTGAT 369985 Query 80015 TCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCA 80074 |||| | | || | ||| | | || |||| |||||||| ||||| || || || | Sbjct 369984 TCTTCCTGATTTCAATAAACTCTACAACATCAACGTGCCACGGCTCCAAATAAATTGCAA 369925 Query 80075 TAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTC 80134 | | || || || ||| || ||||| || || ||||| |||| ||||||||| | Sbjct 369924 TGGCACCTTTACGCTTCCCTCCACCTTGATCAATATACCTAGCAGTGTCATTATAAACGC 369865 Query 80135 TCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGG 80194 || ||| ||||| | ||||| ||| | ||||| || || ||||| ||| | Sbjct 369864 GCAGCATCGGAATTAATCCATTAGATCTCCCATTTGTTCCTCGAATATATGAACCAGTTC 369805 Query 80195 CACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATC 80254 | | ||||||||| | || | || | || || || | ||| || ||||||| Sbjct 369804 CTCTAATATTACTCACTGCCACCCCAAGACCACCCGCAGTCTTACTAATGTTTGCGCATT 369745 Query 80255 GTTTTAACGTATCATAGATGCCCTCTATGCTATCATC---AATCATGTTAAGTAGAAAAC 80311 ||| || ||| |||| || | ||| ||| || |||| || |||| ||||| Sbjct 369744 TAGTTAGTGTGTCAAAGATACCGTTTATTGAATCTTCTGGAATCCTG---AGTAAAAAAC 369688 Query 80312 AGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 80371 | |||||||| | || ||| || | |||||| | || || | || || |||| Sbjct 369687 AAGATGACATTTGAGGTCGTGGAGTGCCTGAATTAAAGAGTGTGGGTGTTGCATGAGTAA 369628 Query 80372 ACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAA 80431 | |||||| || | | | || || |||| || | ||| ||||| | ||||| Sbjct 369627 AATATTTTTGCGATAACAACTCATATGTTTCAAGTGCAGCTTCAATATCACCACAATGAA 369568 Query 80432 TTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTT 80491 | || | ||| ||||| | | || || |||||||| || | ||||| | |||| Sbjct 369567 TACCACAAGAGACCCGCATCAGAAGATGTTGTGGTCTTTCCACAACTTTGTTGTCAATTT 369508 Query 80492 TCAACAAG-TAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 80546 | || ||| || ||| |||| | |||||| || ||||||| | |||| ||| || Sbjct 369507 T-AAGAAGATAGGATCTTTCTAGAGTTTTGAAGGCAAAATAATCGTATTCAAAATC 369453 Score = 232 bits (256), Expect = 1e-55 Identities = 591/881 (67%), Gaps = 45/881 (5%) Strand=Plus/Plus Query 49645 TCTTCTTGA--GAC-ATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAA 49701 || |||||| ||| |||||||| |||| |||||||| || | |||||||| || Sbjct 87453 TCATCTTGATTGACCATAACTCCAGCCATTTGATATTCACCAACTCTCTTTTCGAAGAAG 87512 Query 49702 TTAGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAA 49761 |||||||| |||| | ||| ||| ||||| ||||||| ||||| | ||| || || Sbjct 87513 TTAGTTTTACCTTGAAGTGAAATAAGGTCCATCCAATCAAAAGGATTAGAAACGTTGTAG 87572 Query 49762 AtttttttAAATCCCAATTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTC 49821 |||||| || |||| || ||| |||||||| || |||||||| |||||| | Sbjct 87573 ATTTTTGGAATATCCAAGGCAAAAAGTAATCTATCAGCAACAAATTCAATATATTGGGCC 87632 Query 49822 ATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGT 49881 || | | ||||||| || ||||| | ||| ||||||| || |||||| | | | Sbjct 87633 ATAAGTCTCGAATTCATACCAATAAGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCTT 87692 Query 49882 TCAATGGATACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAAT 49941 |||| || || |||| ||| ||| | || | | || || | | ||| Sbjct 87693 TCAACTTCAACAGCTTCTGATAT----GATTTG-----TTGTACTCTAGGAGCTGGTAAT 87743 Query 49942 --AAATGT-------TTAAACATCAAACATGCGAAATC-GCAGTGCAGACCCTCGTCTCT 49991 |||| | ||| | || ||||| || ||||| ||| || ||||| || || | Sbjct 87744 TTAAATTTAAGGGCTTTATATATTAAACAAGCAAAATCAGCA-TGGAGACCTTCATCACG 87802 Query 49992 ACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAA 50051 |||||| ||||| || ||||| |||||||| ||||| || ||||| |||||||||||||| Sbjct 87803 ACTAATAAGTTCATTAGAAAATGTGAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAA 87862 Query 50052 TATGGACGCAAATG-ACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTC 50110 || | | |||| | |||||||| | |||||||| || || || ||| || || Sbjct 87863 AATTG-CACAAAAGCTACCAGAAAATAGAATTCCTTCAACAGCACAGAATCCAATAATTC 87921 Query 50111 TCTCTCCATAA-CTGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTT 50169 | || || || | || | | || ||||| || ||||| || || ||||||||| Sbjct 87922 TTTCAGCAAAAGATCGCTCAG-AATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTT 87980 Query 50170 ACACAAGGCATCGTT----TCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTT 50225 ||| || || | || || | |||||| | ||| ||| | || | Sbjct 87981 ACA----GCTTCAATATGAGAAATTGCTTCAAAGAGCATTTGACGTTCTTTAATTTCAGT 88036 Query 50226 AACATAAGTATCGATCA--AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATC 50283 || ||| |||| || | || || ||| |||| ||| || | |||||| | ||| Sbjct 88037 AATATATCTATCAATAAGTAATGA--ATAAGTTTCACTATGTATTTGTTCAATAGACATT 88094 Query 50284 TGAAATCCGTAGAAACA-TCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGC 50342 ||||| | || | ||| |||||| || | || || | |||| || || | | || Sbjct 88095 TGAAAAGCATA-ATACATTCTAGCTTCCGGTATTTGTATTTCTCTAAGGAAATTTACTGC 88153 Query 50343 TAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 50402 ||| ||||| | || || || ||||| || ||||| || || || |||| ||| ||||| Sbjct 88154 TAAGTTTTCCATAACAATACCATCACTTGCAGCAAAGAATGCTAAAACATATTTGATAAA 88213 Query 50403 ATGTTTTTCGTTGGGTGTT--AGTTTATTCCAATCATTGATATCTTTAGATATATCTACT 50460 |||| |||| |||| || || | | |||||| | |||||| | || ||| | | Sbjct 88214 ATGTCTTTC--AGGGTCTTTAAGACTTTCCCAATCTCTAGTATCTTGACTTAGATCAATT 88271 Query 50461 TCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 50501 ||||| |||||| || || || || ||||||||||| Sbjct 88272 TCTTCAGTAACCCAAAACGACGCTTCAGCTTTTTTATACAT 88312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268638389520