Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001305475.1_202015-10- 01] 18 sequences; 9,085,686 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2 298 7e-76 >seq2 Length=1258884 Score = 298 bits (330), Expect = 7e-76 Identities = 1183/1849 (64%), Gaps = 26/1849 (1%) Strand=Plus/Minus Query 70800 TGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAG 70859 |||||| || ||||| | ||| || || | || ||| || |||||||||||||| Sbjct 371294 TGTAAATTGTATGGGGCGTGTCGCGCTTTGGGTCCTTAAATAATAAATGCCTGTTTTTAG 371235 Query 70860 ACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTAT 70919 ||| |||| || |||||||||||| | || || | | || ||| || | || Sbjct 371234 ACCTTTTTTCCAACCATAAAAATGCATAGATGATAACTTTGCAAAGTTAGCATTTTCCAT 371175 Query 70920 GTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 70979 ||||| |||| || || |||| | | | ||||| ||||||||||| | || Sbjct 371174 ATGAATGTTCAAAGATTGCGATTGACAAACATATGGACCCCTATCTGCAGCCATATCAAT 371115 Query 70980 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA-CTCGCTTAATATCTTCTGGAA 71038 | |||||||| ||||||||| | ||| ||||||| ||||| | |||||||| |||| Sbjct 371114 TACTGTCTTTTGCTTAATTTCCCATACAGTCTTATAAAGCTCGCGT-ATATCTTCCGGAA 371056 Query 71039 -GGT--TTGTATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCAT 71095 || | |||| ||||| ||| || ||||||||| | | || | | |||| Sbjct 371055 TTGTAAGTATATTTTGAATACTGCCATTATTTGCAATAATATTCTGCTTAAGCCTATCAT 370996 Query 71096 TCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTC 71155 |||||| ||| |||| | | || | ||| ||||| ||||| || || | Sbjct 370995 CCCATAACCCAAGCTCTAGTAAATCATTTAGCAAATGCGGATTTACTACAAAGAACTCAC 370936 Query 71156 CAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTC 71215 |||| | |||||||||| ||||| || |||| | || || | |||||| || | Sbjct 370935 CAGATAGTACTCTACGATGATAAATGTTCGAGGTAAATGGCTCAAAACTCTCATTGTTAC 370876 Query 71216 CCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGAC 71275 | |||||||| | ||| ||||| || ||||| || | | |||||| ||| | || || Sbjct 370875 CTAAAATTTGCGAAGTGGATGCTGTTGGCATTGGAGATATTAATAGAGAATTACGAATAC 370816 Query 71276 CATGTGATCGG--ATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGA---TGGTAC 71330 ||||| | || || ||||||| || | ||||||| ||||| | || |||| Sbjct 370815 CATGT--TTGGAAATCCTATCTTTAAGCAAATCCCAATCACAAAGTCCAGAGTCTGGTGT 370758 Query 71331 AACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGATCCTGCATATGTATC 71390 ||| || || ||||| || || || | |||||| || Sbjct 370757 AACTCCCCACATATCAAATTGTAAAATACCCTTACTCGCAGGCGAACCGGAATATGTTTC 370698 Query 71391 GTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGT 71450 |||||| || | |||||| || || ||||| || || || | ||| ||||||| || Sbjct 370697 GTATGGCCCGTATTTTTCTGCAAGCTCACAGCTAGCGTCGAGAGCTGCATAATAGATAAC 370638 Query 71451 TTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGG-ATAATTTAAG- 71508 ||| ||||| | ||||| | | | ||| || || | || ||| ||| Sbjct 370637 TTCAAAAATTTGTTTATTTAACTTCTTAGCTCCCTCAGACTCGTACGGCATA--CGAAGC 370580 Query 71509 AGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTA 71568 | ||||| |||||| | ||||||| |||||| || | || | ||||| ||| Sbjct 370579 ATCATAAAACAGTCTGCGAGCCCTTGAATGCCAATCCCCAATGGACGATGTCTTAAATTC 370520 Query 71569 GAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG 71628 || ||| | ||| | || |||||| || || || | |||||| | ||| || Sbjct 370519 GATTTTTTACACTCTTTGAGAGAATAATATCCAACGTCAATCAATTTATTCAAATTCCTC 370460 Query 71629 ACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAA--TCTCCCATCTATTACAA 71686 || || || || || |||| || ||||||||| ||| | ||| | Sbjct 370459 GTAATCACCTTCGTAACTTCTTTTAACTTATCAAAATCAAACGTCTTGTTATTTTTATCA 370400 Query 71687 ACACGTT---CAAGG-CAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCA 71742 || || |||| ||| ||| ||||||||||| ||||| || || | | | Sbjct 370399 ACGAATTTTGGAAGGCCAATAGACGCCAGATTACAGACGGCAACTTCGTCCGTGCTAGTG 370340 Query 71743 TATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 71802 |||| ||| ||||| ||||| | ||||| | || ||||| ||||||| || ||| Sbjct 370339 TATTCTATGATTTCTGTGCATAAGTTACTTGAAACAATAGTTCCCAAATTTTTCTGGTTA 370280 Query 71803 CTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGAT 71862 || || | || ||||| |||||| |||||| || || || || ||||| |||| Sbjct 370279 CTTTTGCTATTTGCAGCATCTTTATAACAAATAAATGGTGTCCCCGTCTCAATTTGAGCC 370220 Query 71863 TCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATATTCTTGTATCTCTTTTCTCT 71921 | || || ||| | | || | || || || | ||| | | || | | Sbjct 370219 TGTAAGATTAAGAACCA-AAGTTTCTGCGCTTTCATCGTTTTCCTTCCACGGCCTTGTTT 370161 Query 71922 TTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACA 71981 || || | | ||||| | || || || |||||| ||| | ||||| || Sbjct 370160 CTCATACTCTTCATATAGCTTCTTAAAATCATCGCCCCAAACATCTTGCAATCCCCTGCA 370101 Query 71982 TTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATC 72041 ||||| || ||||| | | ||| ||| ||| | | |||| || ||| || ||||| Sbjct 370100 TTCATCTGGGCACATTAGAGTCCAATCTTGATCCTTCTCAACTCTTTCCATGAACAGATC 370041 Query 72042 AGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTT 72101 ||||| |||||| || ||| ||||| | ||| ||| || ||||| |||||| Sbjct 370040 AGGAACCCAAAGGGCAGGAAAGAGATCGCGACATCTCATCTCTTCCTTTCCGTGATTCTT 369981 Query 72102 TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAAC 72161 | | || | ||| | | || |||| |||||||| ||||| || || || || | Sbjct 369980 CCTGATTTCAATAAACTCTACAACATCAACGTGCCACGGCTCCAAATAAATTGCAATGGC 369921 Query 72162 TCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAA 72221 || || || ||| || ||||| || || ||||| |||| ||||||||| | || Sbjct 369920 ACCTTTACGCTTCCCTCCACCTTGATCAATATACCTAGCAGTGTCATTATAAACGCGCAG 369861 Query 72222 CATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACG 72281 ||| ||||| | ||||| ||| ||||| || || ||||| ||| | | | Sbjct 369860 CATCGGAATTAATCCATTAGATCTCCCATTTGTTCCTCGAATATATGAACCAGTTCCTCT 369801 Query 72282 AATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTT 72341 |||||| || | || | || | || || || | ||| || ||||||| | Sbjct 369800 AATATTACTCACTGCCACCCCAAGACCACCCGCAGTCTTACTAATGTTTGCGCATTTAGT 369741 Query 72342 TAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGA 72401 || || ||| |||| || | ||| ||| || || | |||| |||||| || Sbjct 369740 TAGTGTGTCAAAGATACCGTTTATTGAATCTTCTGGAATCCTGAGTAAAAAACAAGATGA 369681 Query 72402 CATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTT 72461 |||||| | || ||| || | |||||| | || || | || || ||||| |||| Sbjct 369680 CATTTGAGGTCGTGGAGTGCCTGAATTAAAGAGTGTGGGTGTTGCATGAGTAAAATATTT 369621 Query 72462 TTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTAC 72521 || || | | | || || |||| || | ||| ||||| | ||| || || Sbjct 369620 TTGCGATAACAACTCATATGTTTCAAGTGCAGCTTCAATATCACCACAATGAATACCACA 369561 Query 72522 CGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAA 72581 | ||| ||||| | | ||| || |||||||| || | ||||| | ||||| || || Sbjct 369560 AGAGACCCGCATCAGAAGATGTTGTGGTCTTTCCACAACTTTGTTGTCAATTTT-AAGAA 369502 Query 72582 G-TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 72629 | |||||| |||| | |||||| || ||||||| | |||| ||| || Sbjct 369501 GATAGGATCTTTCTAGAGTTTTGAAGGCAAAATAATCGTATTCAAAATC 369453 Score = 224 bits (248), Expect = 1e-53 Identities = 598/893 (67%), Gaps = 43/893 (5%) Strand=Plus/Plus Query 41749 GTCTTCTTGA--GAC-ATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAA 41805 ||| |||||| ||| |||||||| |||| |||||||| || | |||||||| || Sbjct 87452 GTCATCTTGATTGACCATAACTCCAGCCATTTGATATTCACCAACTCTCTTTTCGAAGAA 87511 Query 41806 ATTAGTCTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATA 41865 ||||| || |||| | ||| ||| ||||| ||||||| ||||| | ||| || || Sbjct 87512 GTTAGTTTTACCTTGAAGTGAAATAAGGTCCATCCAATCAAAAGGATTAGAAACGTTGTA 87571 Query 41866 AAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTT 41925 |||||| || |||| || ||| |||||||| || | ||||| |||||| Sbjct 87572 GATTTTTGGAATATCCAAGGCAAAAAGTAATCTATCAGCAACAAATTCAATATATTGGGC 87631 Query 41926 CATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTG 41985 ||| | | ||||||| || ||||| | ||| ||||||| || |||||| | | Sbjct 87632 CATAAGTCTCGAATTCATACCAATAAGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCT 87691 Query 41986 TTCAATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGA----T 42041 ||||| || || |||| ||| || | |||| | | | ||| | Sbjct 87692 TTCAACTTCAACAGCTTCTGATATGATTTGTTGTACTCT------AGGAGCTGGTAATTT 87745 Query 42042 ACAATAAATG--TTTAAACATCAAACATGCGAAATC-GCAGTGCAGACCCTCATCTCTAC 42098 | | | || | |||| | || ||||| || ||||| ||| || ||||| ||||| | || Sbjct 87746 AAATTTAAGGGCTTTATATATTAAACAAGCAAAATCAGCA-TGGAGACCTTCATCACGAC 87804 Query 42099 TAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATA 42158 |||| | ||| || ||||| |||||||| ||||| || ||||| |||||||||||||| | Sbjct 87805 TAATAAGTTCATTAGAAAATGTGAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAA 87864 Query 42159 TAGACGCAAATGAT-CCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTC 42217 | | | |||| | | |||||||| | |||||||| || || || |||||| ||| Sbjct 87865 TTG-CACAAAAGCTACCAGAAAATAGAATTCCTTCAACAGCACAGAATCCAATAATTCTT 87923 Query 42218 TCTCCATAA-CCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTAC 42276 || || || || | | || ||||| || ||||| || || ||||||||||| Sbjct 87924 TCAGCAAAAGATCGCTCAG-AATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTTAC 87982 Query 42277 ACAAGGCATCGTT----TCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAA 42332 | || || | || || | |||||| | ||| ||| | || ||| Sbjct 87983 A----GCTTCAATATGAGAAATTGCTTCAAAGAGCATTTGACGTTCTTTAATTTCAGTAA 88038 Query 42333 CATATGTATCGATCA--AAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTG 42390 |||| |||| || | || || ||| |||| ||| || | |||||| | ||| || Sbjct 88039 TATATCTATCAATAAGTAATGA--ATAAGTTTCACTATGTATTTGTTCAATAGACATTTG 88096 Query 42391 AAATCCGTAGAAACA-TCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTA 42449 ||| | || | ||| ||| || || | | |||| |||| || || | | |||| Sbjct 88097 AAAAGCATA-ATACATTCTAGCTTCCGGTATTTGTATTTCTCTAAGGAAATTTACTGCTA 88155 Query 42450 AATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAAT 42509 | ||||| | || || || ||||| || ||||| || || || |||| ||| ||||||| Sbjct 88156 AGTTTTCCATAACAATACCATCACTTGCAGCAAAGAATGCTAAAACATATTTGATAAAAT 88215 Query 42510 ATTTTTCGTCCGGTGTT--AATTTATTCCAATCATTGATATCTTTAGATATATCTACTTC 42567 | |||| ||| || | | | |||||| | |||||| | || ||| | ||| Sbjct 88216 GTCTTTC--AGGGTCTTTAAGACTTTCCCAATCTCTAGTATCTTGACTTAGATCAATTTC 88273 Query 42568 TTC--TACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATC 42618 ||| || | |||||| || ||||| || ||||||||||| ||| ||||| Sbjct 88274 TTCAGTAAC--CCAAAACGACGCTTCAGCTTTTTTATACATTGACCAAATATC 88324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671139048993680