Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001305475.1_202015-10- 01] 18 sequences; 9,085,686 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq1 87.8 2e-12 seq7 84.2 2e-11 >seq1 Length=1198458 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 19994 CTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAA 20053 || || || ||||| | || || || || || || ||||| || | |||| || | Sbjct 466682 CTTAATACTAAATGCAAAGTGGACTCCTTCTGGATATTGTAGTCAGATAGAGTTCTACCA 466741 Query 20054 TCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTG 20113 ||||||||||| || || ||| | || || | ||||||||| || | || || || Sbjct 466742 TCTTCCAATTGCTTTCCAGCAAAGATCAGACGCTGTTGATCAGGAGGAATACCCTCCTTA 466801 Query 20114 TCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATG 20173 || || ||| || || | ||| || |||| |||||| ||||| || ||| Sbjct 466802 TCCTGGATCTTTGCCTTTACATTCTCAATAGTATCGGAAGGTTCAACTTCCAATGTGATG 466861 Query 20174 GTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATTTT 20211 || || || || || |||||||||||||||||||| || Sbjct 466862 GTCTTTCCTGTTAAAGTTTTGACAAAAATTTGCATCTT 466899 >seq7 Length=822230 Score = 84.2 bits (92), Expect = 2e-11 Identities = 163/241 (68%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||| |||| | |||| || || |||| || || |||||||| ||||||||||| Sbjct 558560 TTCCGCCTCTAAGTCTCAGGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCAG 558501 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | |||| || ||| || |||||||| || ||| | || | | |||||||| | Sbjct 558500 AGAGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTG 558441 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | ||||| || || ||| ||| || || | ||| | ||| |||||| Sbjct 558440 GGATTCCTTCCTTATCTTGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGTTCAA 558381 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATTTTTAAACTCT 20219 ||||| || || || || || ||||| || || |||||||| ||||| ||| | ||| Sbjct 558380 CTTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCATATTTGTATTCT 558321 Query 20220 T 20220 | Sbjct 558320 T 558320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419587107953058