Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001305475.1_202015-10- 01] 18 sequences; 9,085,686 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq2 302 6e-77 >seq2 Length=1258884 Score = 302 bits (334), Expect = 6e-77 Identities = 1197/1858 (64%), Gaps = 44/1858 (2%) Strand=Plus/Minus Query 61849 TGTGAATTGAATGGGAGCGGAT-GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTA 61907 ||| ||||| ||||| ||| | ||| || || | || ||| || || || ||||||| Sbjct 371294 TGTAAATTGTATGGG-GCGTGTCGCGCTTTGGGTCCTTAAATAATAAATGCCTGTTTTTA 371236 Query 61908 GACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTA 61967 |||| |||| || |||||||||||| | || || | | | | | || | | | Sbjct 371235 GACCTTTTTTCCAACCATAAAAATGCATAGATGATAACTTTGCAAAGTTAGCATTTTCCA 371176 Query 61968 TATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTA 62027 |||| || |||| |||||| |||| | | | ||||| ||||||||||| | | Sbjct 371175 TATGAATGTTCAAAGATTGCGATTGACAAACATATGGACCCCTATCTGCAGCCATATCAA 371116 Query 62028 TAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA-CTCGCTTAATATCTTCTGGA 62086 | | |||||||| ||||||||| | ||| ||||||| ||||| | |||||||| ||| Sbjct 371115 TTACTGTCTTTTGCTTAATTTCCCATACAGTCTTATAAAGCTCGCGT-ATATCTTCCGGA 371057 Query 62087 A-GGT--TTGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCA 62143 | || | |||| ||||| ||| || ||| ||||| | | ||| | | |||| Sbjct 371056 ATTGTAAGTATATTTTGAATACTGCCATTATTTGCAATAATATTCTGCTTAAGCCTATCA 370997 Query 62144 TTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCT 62203 | |||||| ||| |||| | | || | ||||||||| ||||| || || Sbjct 370996 TCCCATAACCCAAGCTCTAGTAAATCATTTAGCAAATGCGGATTTACTACAAAGAACTCA 370937 Query 62204 CCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTT 62263 ||||| | |||||| ||| ||||| || |||| | || || | | |||||| || Sbjct 370936 CCAGATAGTACTCTACGATGATAAATGTTCGAGGTAAATGGCTCAAAACTCTCATTGTTA 370877 Query 62264 CCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGA 62323 || |||||||| | ||| ||||| || ||||| || | | |||| | ||| | || | Sbjct 370876 CCTAAAATTTGCGAAGTGGATGCTGTTGGCATTGGAGATATTAATAGAGAATTACGAATA 370817 Query 62324 CCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGA---CGGTA 62378 || ||||| | || ||||||| || ||||||| ||||| | || ||| Sbjct 370816 CC--ATGTTTGGAAATCCTATCTTTAAGCAAATCCCAATCACAAAGTCCAGAGTCTGGTG 370759 Query 62379 CAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTAT 62438 ||| ||||| |||||| ||||| || ||| || |||||| | Sbjct 370758 TAACTCCCCACATATCAAATTGTAAAATACCCTTACTCGCAGGCGAACCGGAATATGTTT 370699 Query 62439 CGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGG 62498 ||||||| || | || || || || ||||| || || || | || | ||||| || Sbjct 370698 CGTATGGCCCGTATTTTTCTGCAAGCTCACAGCTAGCGTCGAGAGCTGCATAATAGATAA 370639 Query 62499 TTTCGAAGATCTTCTTATTT-AGATCTT-GCGCTTCCAGGCTATCAAATGG-ATAATTTA 62555 ||| || || | |||||| | |||| || | ||| | || | || ||| | Sbjct 370638 CTTCAAAAATTTGTTTATTTAACTTCTTAGCTCCCTCAGAC--TCGTACGGCATA--CGA 370583 Query 62556 AG-AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTA 62614 || | ||||| |||||| | ||||||| ||||| || | || | |||||| | Sbjct 370582 AGCATCATAAAACAGTCTGCGAGCCCTTGAATGCCAATCCCCAATGGACGATGTCTTAAA 370523 Query 62615 TTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTT 62674 || || ||| | ||| | || |||||| || || || | |||||| | ||| Sbjct 370522 TTCGATTTTTTACACTCTTTGAGAGAATAATATCCAACGTCAATCAATTTATTCAAATTC 370463 Query 62675 CTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTA---TT 62731 || ||| || || || || || | || ||||||||| || | || || Sbjct 370462 CTCGTAATCACCTTCGTAACTTCTTTTAACTTATCAAAATCAAA-CGTCTTGTTATTTTT 370404 Query 62732 ACAAAC--ATGTTCAATG--CAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATC 62787 | ||| || || | | ||| ||| ||||||||||| ||||| || || | | Sbjct 370403 ATCAACGAATTTTGGAAGGCCAATAGACGCCAGATTACAGACGGCAACTTCGTCCGTGCT 370344 Query 62788 CGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTG 62847 | |||| ||| || || ||||| | ||||| | || ||||| ||||||| || Sbjct 370343 AGTGTATTCTATGATTTCTGTGCATAAGTTACTTGAAACAATAGTTCCCAAATTTTTCTG 370284 Query 62848 ATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTG 62907 ||||| || | || ||||| |||||| ||| ||||| || || || ||||| || Sbjct 370283 GTTACTTTTGCTATTTGCAGCATCTTTATAACAAATAAATGGTGTCCCCGTCTCAATTTG 370224 Query 62908 AGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATAGATTTGTATCTCTTTT 62966 || | || || ||| | | || | || || || | || | | | Sbjct 370223 AGCCTGTAAGATTAAGAACCA-AAGTTTCTGCGCTTTCATCGT--TTTCCTTCCACGGCC 370167 Query 62967 CTCTTTCGTATAGTGT--ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCC 63024 | |||| ||| | | ||| | | || || || |||||||||| | || ||| Sbjct 370166 TTGTTTCTCATACTCTTCATATAGCTTCTTAAAATCATCGCCCCAAACATCTTGCAATCC 370107 Query 63025 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC---ACTCGTTTCAT 63081 |||||||| || ||||| | | ||| ||| | ||||||| |||| || ||| Sbjct 370106 CCTGCATTCATCTGGGCACATTAGAGTCCAATCT---TGATCCTTCTCAACTCTTTCCAT 370050 Query 63082 AAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCC 63141 || |||||||||| |||||| || ||| ||||| | ||| || || ||||| Sbjct 370049 GAACAGATCAGGAACCCAAAGGGCAGGAAAGAGATCGCGACATCTCATCTCTTCCTTTCC 369990 Query 63142 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 63201 |||||| | | || | ||| | | || |||| |||||||| ||||| || || Sbjct 369989 GTGATTCTTCCTGATTTCAATAAACTCTACAACATCAACGTGCCACGGCTCCAAATAAAT 369930 Query 63202 GGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 63261 || || | || || || ||| || ||||| || || ||||| |||| |||||| Sbjct 369929 TGCAATGGCACCTTTACGCTTCCCTCCACCTTGATCAATATACCTAGCAGTGTCATTATA 369870 Query 63262 AACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCC 63321 ||| | || ||| ||||| | ||||| ||| | ||||| || ||| ||||| || Sbjct 369869 AACGCGCAGCATCGGAATTAATCCATTAGATCTCCCATTTGTTCCTCGAATATATGAACC 369810 Query 63322 ACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGC 63381 | | | | ||||||||| | || | || | || || || | ||| || ||| Sbjct 369809 AGTTCCTCTAATATTACTCACTGCCACCCCAAGACCACCCGCAGTCTTACTAATGTTTGC 369750 Query 63382 GCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAA 63441 |||| ||| || ||| |||| || | ||| ||| || || | |||| ||| Sbjct 369749 GCATTTAGTTAGTGTGTCAAAGATACCGTTTATTGAATCTTCTGGAATCCTGAGTAAAAA 369690 Query 63442 ACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGT 63501 ||| |||||||| | || ||| || | |||||| | || || | || ||||| Sbjct 369689 ACAAGATGACATTTGAGGTCGTGGAGTGCCTGAATTAAAGAGTGTGGGTGTTGCATGAGT 369630 Query 63502 AAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATG 63561 ||| |||||| || | | | || || |||| || | || ||||| | ||| Sbjct 369629 AAAATATTTTTGCGATAACAACTCATATGTTTCAAGTGCAGCTTCAATATCACCACAATG 369570 Query 63562 AATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTAT 63621 ||| || | ||| ||||| | | || || |||||||| || | ||||||| || Sbjct 369569 AATACCACAAGAGACCCGCATCAGAAGATGTTGTGGTCTTTCCACAACTTTGTTGTCAAT 369510 Query 63622 TTTCAACAAG-TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 63678 ||| || ||| |||||| |||| | |||||| || ||||||| | |||| ||| || Sbjct 369509 TTT-AAGAAGATAGGATCTTTCTAGAGTTTTGAAGGCAAAATAATCGTATTCAAAATC 369453 Score = 250 bits (276), Expect = 3e-61 Identities = 590/874 (68%), Gaps = 29/874 (3%) Strand=Plus/Plus Query 32345 GTCTTCTTGA--GAC-ATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAA 32401 ||| |||||| ||| |||||||| |||| |||||||| || | |||||||| || Sbjct 87452 GTCATCTTGATTGACCATAACTCCAGCCATTTGATATTCACCAACTCTCTTTTCGAAGAA 87511 Query 32402 ATTAGTTTTACCTTCTAATGATATATTTTCCATGAAATCGAATGGATTGGTAACATTATA 32461 ||||||||||||| | ||| ||| ||||| |||| || ||||| | ||| || || Sbjct 87512 GTTAGTTTTACCTTGAAGTGAAATAAGGTCCATCCAATCAAAAGGATTAGAAACGTTGTA 87571 Query 32462 AAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTT 32521 |||||| || |||| || ||| |||||||| || |||||||| |||||| Sbjct 87572 GATTTTTGGAATATCCAAGGCAAAAAGTAATCTATCAGCAACAAATTCAATATATTGGGC 87631 Query 32522 CATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTG 32581 ||| | | ||||||| || ||||| | ||| ||||||| || |||||| | | Sbjct 87632 CATAAGTCTCGAATTCATACCAATAAGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCT 87691 Query 32582 TTCAATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGG----AT 32637 ||||| || || |||| ||| || || || | || | | ||| | Sbjct 87692 TTCAACTTCAACAGCTTCTGATATGAT-----TTGTTG-TACTCTAGGAGCTGGTAATTT 87745 Query 32638 ACAATAAATG--TTTAAACATCAAACATGCGAAATC-GCAGTGTAGACCCTCGTCTCTAC 32694 | | | || | |||| | || ||||| || ||||| ||| || ||||| || || | || Sbjct 87746 AAATTTAAGGGCTTTATATATTAAACAAGCAAAATCAGCA-TGGAGACCTTCATCACGAC 87804 Query 32695 TAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATA 32754 |||| | ||| || ||||| |||||||| ||||| || ||||| |||||||||||||| | Sbjct 87805 TAATAAGTTCATTAGAAAATGTGAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAA 87864 Query 32755 TGGACGCAAATGAT-CCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTC 32813 | | | |||| | | |||||||| | ||||||||| || || || |||||| ||| Sbjct 87865 TTG-CACAAAAGCTACCAGAAAATAGAATTCCTTCAACAGCACAGAATCCAATAATTCTT 87923 Query 32814 TCTCCATAACCGGCGCT-GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTAC 32872 || || || |||| || ||||| || ||||| || || ||||||||||| Sbjct 87924 TCAGCA-AAAGATCGCTCAGAATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTTAC 87982 Query 32873 ACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATA 32932 | || || || | |||||| | ||| ||| | || ||| ||| Sbjct 87983 AGCTTCAATATGAGAAATTGCTTCAAAGAGCATTTGACGTTCTTTAATTTCAGTAATATA 88042 Query 32933 TGTATCAATCA--AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAAT 32990 | ||||||| | || || ||| |||| ||| || | |||||| | ||||||||| Sbjct 88043 TCTATCAATAAGTAATGA--ATAAGTTTCACTATGTATTTGTTCAATAGACATTTGAAAA 88100 Query 32991 CCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTT 33050 | || | |||||| || | || |||| |||| || || | ||||||| ||| Sbjct 88101 GCATAATACATTCTAGCTTCCGGTATTTGTATTTCTCTAAGGAAATTTACTGCTAAGTTT 88160 Query 33051 TCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTT 33110 || | || || || ||||| || ||||| || || || |||| ||| ||||||| | || Sbjct 88161 TCCATAACAATACCATCACTTGCAGCAAAGAATGCTAAAACATATTTGATAAAATGTCTT 88220 Query 33111 TCGTCTGGTGTT--AGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCA 33168 || ||| || || | | |||||| | |||||| | || ||| | |||||| Sbjct 88221 TC--AGGGTCTTTAAGACTTTCCCAATCTCTAGTATCTTGACTTAGATCAATTTCTTCAG 88278 Query 33169 CTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 33202 |||||| || || || || ||||||||||| Sbjct 88279 TAACCCAAAACGACGCTTCAGCTTTTTTATACAT 88312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633631857432800