Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001305475.1_202015-10- 01] 18 sequences; 9,085,686 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq13 246 2e-59 seq4 242 3e-58 seq9 165 7e-35 seq10 122 7e-22 seq7 122 7e-22 seq1 116 3e-20 >seq13 Length=102098 Score = 246 bits (272), Expect = 2e-59 Identities = 579/864 (67%), Gaps = 25/864 (3%) Strand=Plus/Plus Query 551749 TATCTCTCGAAGATGGTCTCTTTTCTGTATTAGCTACTAGTGGAGATTCTCATCTTGGTG 551808 || || | ||||||||| | ||| || |||||| ||| ||| |||| | |||| Sbjct 4230 TAACTATTGAAGATGGTATTTTTGAAGTTAAAGCTACCGCTGGTGATACTCACTTGGGTG 4289 Query 551809 GCGAAGATTTTGATAATAGACTGGTATCATGGTGTGTTGAAGATTTTAAACGAAAAAACA 551868 | |||||||||||||| ||||| ||| || ||||| ||||||| || |||| || | Sbjct 4290 GTGAAGATTTTGATAACAGACTCGTAGAATTCTGTGTACAAGATTTCAAGAGAAAGAATA 4349 Query 551869 AAGTT---GATCTATCTACATCTGCCAAAGCTCTTCGTCGTCTAAGAACTGCTTGCGAAA 551925 || | ||| || | ||| ||| | |||| | | | || |||||| ||||| Sbjct 4350 GAGGTATGGATTTAACCACAAATGCTAGAGCTTTAAGAAGACTCAGAACTCAATGCGAGC 4409 Query 551926 GAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATTGAAGTAGATTCATTATTTG 551985 | || || || || | |||||| ||||||| | || ||||| |||||||| | | || Sbjct 4410 GTGCAAAGAGAACTTTGTCATCTTCTACTCAAGCTACAATTGAGTTAGATTCACTCTATG 4469 Query 551986 AGGGAATTGATTATA-ATACGCCTATTTCGAGGGCCAAATTTGAAGATATTTGTTCTGAT 552044 | || ||||||||| | ||| || || || | ||| ||||| | || ||||| Sbjct 4470 AAGGTATTGATTATTCAGTTGCC-ATCAGTAGAGCTAGATTCGAAGAACTCTGCGCTGAT 4528 Query 552045 CTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAGATTCAAAGATTGATAA- 552103 ||| | ||| | | ||||| || |||| | | ||| | || || || Sbjct 4529 TACTTCCGTGCAACTTTAGCTCCAGTTGAGAAAGTACTCAAGGATGCTGGTATGGACAAG 4588 Query 552104 --ATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATTCGC 552161 ||| |||||||| |||| | |||||||| |||||| | ||||| || ||| Sbjct 4589 AGATCT---GTACATGATGTTGTATTGGTTGGTGGTTCTACACGTATTCCAAAGGTTCAG 4645 Query 552162 GAAATG-TTAAGTTCTTATTTCAATGGTAAAAA---ATTAAATGAAAGTGTTAATCCAGA 552217 | || || || || ||| || |||||| | || || | || | |||||||| Sbjct 4646 GCCTTGATTCAGGAATTCTTT-AACGGTAAAGAGCCATGCAAAGCAA---TCAATCCAGA 4701 Query 552218 TGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGA---CAAACTGA 552274 || |||||||| |||||||| || | ||||| ||||| | ||| ||| | Sbjct 4702 CGAAGCTGTTGCTTATGGTGCTGCTGTACAAGCTGCTATCTTAAATGGTGAGCAATCCTC 4761 Query 552275 TGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAAC 552334 || |||| || | || | | |||||| |||| |||| || ||||||||||| Sbjct 4762 TGCCG---TACAGGATCTCTTATTATTGGATGTTGCTCCATTATCACTCGGTTTAGAAAC 4818 Query 552335 AGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATC 552394 | ||| ||| ||||||| || ||||| || | ||||| ||||| || || || | Sbjct 4819 TGCTGGTGGTGTTATGACCAAGCTTATTGAACGTAATACAACTATCCCAGCAAAGAAGAC 4878 Query 552395 TCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGG 552454 | || || |||| ||| | ||||| || | || ||| || ||| ||| ||| || Sbjct 4879 ACAAGTCTTCACTACTTATGCTGATAACCAGAGTGGTGTCTTGATCCAAGTTTATGAGGG 4938 Query 552455 AGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCC 552514 || ||| | ||||| ||||| ||| || || | || || | || |||||||| Sbjct 4939 TGAGAGAGCCATGACTAAGGATAACCATCTCCTCGGAAAGTTCCATCTTGATGGTATTCC 4998 Query 552515 TCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAAT 552574 || || || | || ||||| ||||||||||| || || ||||| ||||| ||||| || Sbjct 4999 ACCAGCACCAAGAGGTGTACCACAAATTGAAGTCACCTTTGATATTGATGCTAATGGTAT 5058 Query 552575 TTTGAATGTGACTGCTTGTGATAA 552598 ||||||||| ||||| |||||| Sbjct 5059 CTTGAATGTGTCTGCTGTTGATAA 5082 Score = 214 bits (236), Expect = 1e-49 Identities = 382/553 (69%), Gaps = 11/553 (2%) Strand=Plus/Plus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 |||||| ||||| |||||||| |||||||| ||||||||||| ||| ||| | || Sbjct 3613 AGCTATTGGTATTGATTTAGGTACCACATACTCATGTGTTGGTGTATGGAGAAACGATAC 3672 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 || || ||| || | || |||||||||||| | || || ||||| ||||| | || || Sbjct 3673 TGTAGATATTGTTCCAAACGATCAAGGTAACCGTACAACACCATCATATGTAGCATTTAC 3732 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAA 550170 |||||||| | | | |||||||||||||||| | |||| || | || || || Sbjct 3733 AGAAACTGAGCGTCTTATTGGTGATGCAGCAAAGAACCAAGTTGCTAGAAACCCAGAAAA 3792 Query 550171 TACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGC 550230 ||| ||||||||||||||||| | ||||| |||| ||| ||||| | | || || Sbjct 3793 TACAGTTTTTGATGCTAAACGTCTTATTGGTAGAAAGTTTGATGATCAGGCAGTACAAAG 3852 Query 550231 AGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTC--TGGAAAACCTTAT----AT 550284 ||||||| || ||||| || || | |||| | | | ||| || | || | Sbjct 3853 TGATATGACTCACTGGCCATTTAAAGTAGTTAGAGGTCCAAAGGACAAGCCAATCATCAG 3912 Query 550285 TG-AAGCTACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGG 550343 || || ||||| | | || | || |||| | ||| ||||||| |||||| Sbjct 3913 TGTAAACTACTTAGG--TGAAAAG--AAGGAATTCCATGCTGAAGAAATTTCTGCTATGG 3968 Query 550344 TTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAG 550403 ||||| || ||||| | | | || | | |||| || ||| | | || | Sbjct 3969 TTTTACAAAAGATGAAGGAGATCTCTGAAGCATACTTGGGTCGCCAAATTAAGAACGCTG 4028 Query 550404 TAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGAC 550463 || | ||||| ||||| ||||| ||||||||||| |||||||| || || ||||| || Sbjct 4029 TAGTTACTGTTCCAGCTTATTTCAATGACTCACAGCGTCAAGCAACAAAGGATGCAGGTG 4088 Query 550464 GTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCAT 550523 |||||||| | ||||| | | || || || || || ||||| ||||| |||| | Sbjct 4089 CAATTGCTGGTTTGAATGTAATGAGAATCATTAACGAGCCAACTGCAGCTGCTATTGCTT 4148 Query 550524 ATGGACTTGATAA 550536 |||| |||||||| Sbjct 4149 ATGGTCTTGATAA 4161 Score = 86.0 bits (94), Expect = 5e-11 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 361701 CAAGACCATAAGCTAATGAAGCAGCTGTTGGTTCGTTAATTATTTTAATAACATTGAGTC 361760 ||||||||||||| | | ||| || ||||| |||||||| ||| | || ||||| | | Sbjct 4157 CAAGACCATAAGCAATAGCAGCTGCAGTTGGCTCGTTAATGATTCTCATTACATTCAAAC 4098 Query 361761 CCGCTATTTTTGATGCATCTAAAGTGGCTTGACGTTGTGCATCATTAAAATATGCAGGAA 361820 | || ||| |||||| || |||||||| |||| ||||| ||||| || |||| Sbjct 4097 CAGCAATTGCACCTGCATCCTTTGTTGCTTGACGCTGTGAGTCATTGAAATAAGCTGGAA 4038 Query 361821 CAGTAATCACTGCTTTTTCAACTTG 361845 |||||| || || || | || ||| Sbjct 4037 CAGTAACTACAGCGTTCTTAATTTG 4013 >seq4 Length=1009175 Score = 242 bits (268), Expect = 3e-58 Identities = 480/700 (69%), Gaps = 33/700 (5%) Strand=Plus/Plus Query 368481 TGAAACATTTAGAGAAAAAATGTTAAATAATAATTCTAAAATAAATTGGATGCCATCTAA 368540 |||| | || | ||| ||| | |||| ||||||| |||| |||||||| ||| | | Sbjct 865743 TGAATCTTTAAAAGATAAATTATTAATTAATAATGAAAAAACTAATTGGATTCCAAATTA 865802 Query 368541 TATTGGAACAAAACATTTTGATAATTGGCTCCAAAATTCAGTTGATTGGTGTATTTCAAG 368600 | || | |||| ||| |||||||| | ||| || | ||||||||| || | Sbjct 865803 TGTTAAAGAAAAAAGATTTCATAATTGGTTACAAGATGCTAGAGATTGGTGTGTTAGTCG 865862 Query 368601 AAGTAGGTTTTGGGGAACTCCAATTCCAGTATGGAAATCTGATGATGGTGAAGAAATTGT 368660 | | | ||||||||||| || || || ||||| ||| || ||| | | ||| Sbjct 865863 TAATCGTTTTTGGGGAACACCTATACCTATATGGGTATCAGAAGATTATACAATTATTAA 865922 Query 368661 TTGTATAGGTTCAATTAAAGAATTGCAAGAATTA---TCTGGTGTGCAAAATA------T 368711 ||||| ||| ||| ||||||| || ||| || | | || ||| | Sbjct 865923 ATGTATTGGTAGTATTGAAGAATTAAAATCTTTAGCATCCAATTTAAAAGATAAAGAAAT 865982 Query 368712 TAGTGATTTACATATTGATAAAATTGATCACATTAAAATTCC--ATCAAAGAAAGGAAAA 368769 || |||| ||||| | || |||||| | ||| ||||||| ||| |||| ||||| Sbjct 865983 TAATGATATACATCGTCATTTTATTGATTATATTGAAATTCCTGATCCAAGA--GGAAAT 866040 Query 368770 GGTTT------ATTGTCTCGAGTTGAAGGAGTTTTGGATTGCTGGTTTGAATCAGGTTCT 368823 || ||| || |||||| |||||| ||||| ||||||||||| |||||| Sbjct 866041 AATTATCCACCATTAAAAAGAATTGAAGAAGTTTTTGATTGTTGGTTTGAATCTGGTTCT 866100 Query 368824 ATGCCTTATGG-TCAAATACATTATCCATTTGATAACGCAAAATACTTTGATAATGATAA 368882 |||||||||| || | || ||||||||||||| || | ||| ||| ||||| Sbjct 866101 ATGCCTTATGCATCCATTA-ATTATCCATTTGAAAATCAAGAATTATTTAATAAT----- 866154 Query 368883 AGATTATGTGGCTGATTTTGTAACAGAATCAATTGATCAAACACGTGGTTGGTTTTATAC 368942 | ||| || | |||||||| ||| | ||||||||| | || ||||||||||| Sbjct 866155 ATATTTCCTG-CAGATTTTGTTGGTGAAGGTTTAGATCAAACAAGAGGATGGTTTTATAC 866213 Query 368943 CCTATTAGTATTATCCACAGCTATTTTCGATAAACCGGCTTTTAAAAATGTAATAGTAAC 369002 || | |||||||| ||||| | || ||| |||| |||||||||||| | || || | Sbjct 866214 ATTAATGGTATTATCAACAGCATTATTTGATCAACCAGCTTTTAAAAATATTATTGTTAA 866273 Query 369003 TGGTATTGTTAATGCATCTGATGGTCAAAAGATGTCAAAAAG--TAAGGGTAATTATTCC 369060 |||| | ||| |||||||||||| |||| ||||||||||| ||| |||||| | Sbjct 866274 TGGTTTAGTTTTAGCATCTGATGGTAAAAAAATGTCAAAAAGATTAA--AAAATTATCCT 866331 Query 369061 GATCC-TAATATTTTAATTGATAAATTTGGTGCTGATACTTTGAGATTATACCTATTGTC 369119 ||||| | | || || || |||||| |||||| ||| |||| ||||||| || | Sbjct 866332 GATCCATTAGATATT-GTTAATAAATATGGTGCAGATTCTTTAAGATTATTTTTAATTAA 866390 Query 369120 ATCACCTGTAGTAAAAGCAGAATCTATTAAATTTGATGAA 369159 ||||| || || | ||||||| || | | |||| | ||| Sbjct 866391 TTCACCAGTTGTTAGAGCAGAAACTTTAAGATTTAAAGAA 866430 Score = 123 bits (136), Expect = 2e-22 Identities = 209/300 (70%), Gaps = 2/300 (1%) Strand=Plus/Minus Query 552303 GATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATC 552362 || ||||| || ||||| | ||| | ||||| | || || || | ||| | || Sbjct 765740 GACGTTACACCCTTATCTTTAGGTATTGAAACTTTGGGTGGAGTTTTTACTCGATTAATT 765681 Query 552363 GATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAAT 552422 | |||||||| || || ||| |||||| | ||||| || || | |||| ||| Sbjct 765680 AACAGAAATACCACAATACCTACTAAAAAGAGCCAAGTATTCTCCACTGCTGCAGACAAT 765621 Query 552423 CAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAAT 552482 |||||| ||| |||| || |||| ||||||||||| |||| || |||||||| Sbjct 765620 CAAACTCAAGTTGGAATTAAAGTTTTCCAAGGAGAAAGAGAATTTGCTGCTGATAATAAG 765561 Query 552483 CAACTTGGT-ACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAAT 552541 ||||| | ||| || | | || |||||||| || || | || ||||| ||||| Sbjct 765560 TTGCTTGGACAATTTGAAATGATG-GGAATTCCTCCAGCACCCAGAGGGGTACCTCAAAT 765502 Query 552542 TGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAAATC 552601 |||||| || || ||||| ||||| ||||||||| ||||||| ||| |||||| || Sbjct 765501 TGAAGTCACCTTTGATATTGATGCAAATGGAATTATGAATGTTGGTGCAATTGATAAGTC 765442 >seq9 Length=411987 Score = 165 bits (182), Expect = 7e-35 Identities = 343/505 (68%), Gaps = 13/505 (3%) Strand=Plus/Minus Query 428100 AACCGGTTCCAATTCCTTCTGTACCATTTACAAGAATCATTGGAATGACTGGTGCATAAT 428159 |||| || |||||||| || ||||||||||| | |||||||||||| | ||| | |||| Sbjct 217846 AACCTGTACCAATTCCATCAGTACCATTTACCAAAATCATTGGAATTATTGGAACGTAAT 217787 Query 428160 ATTGTGGTTCAATCATTTTATTATCTTCATATTGTAAATGTAAAATATCAAAATCATGCT 428219 || |||||||| || ||| |||||| || ||| | | | |||| || Sbjct 217786 ATAAAGGTTCAATTTGTTGTCCATCATCATATAAATAAGTTAATAAAGGATCATCAGCCT 217727 Query 428220 CGATAAATAtttttttAGCCAATTCATCAAGTTGTGTAAAGATATATCTTGCG---CTTG 428276 | || || | | ||| | ||| | || | ||||| ||||| | || |||| Sbjct 217726 CTGGGAAAATATATCTAGTCCATTTAGATAGCTTAGTAAATATATAACGAGCAGCACTTG 217667 Query 428277 CGGAATCTTTACCTCCTGACATTCTAGTTCCAAATTGTCCATTAGGCATCAATAAATTAA 428336 | |||||| || ||| ||||| | |||||||| ||| || |||| ||| | Sbjct 217666 C---ATCTTTTCCACCTTCTTTTCTACTACCAAATTGACCACATGGTTCTAATAGATTTA 217610 Query 428337 TATTATTACTTCCCACATAATTTTGGGCCATATTAACAATGGTACTAGTTAAGGATTGTT 428396 |||||||||||| ||| ||||||| |||||||||||||| ||||| || ||| || Sbjct 217609 GATTATTACTTCCAACAAAATTTTGAGCCATATTAACAATAGTACTTTGCAATGATGATT 217550 Query 428397 CACCATGATGATATTTAGTTCTTTTTGAAACTGCACCTTGTAATTCTGATACCTTTATTT 428456 | ||||||||||| | | || | ||| ||| ||||| || | ||||| Sbjct 217549 CTCCATGATGATAAGCACTATGTTCAGCAACATAACCAGCTAATTGTG-CAACTTTA--A 217493 Query 428457 CTTCTTTATAAATACCTTCTTCTACTGATCCATAAAATACTTTGCGTTGTGATGGTTTGA 428516 ||| |||| || || || | || | || ||| |||||| | |||| ||||| | Sbjct 217492 GTTCATTATTAAGCTTTTTTTTAAATGTTGCAAAAAGTACTTTTCTTTGTCCAGGTTTTA 217433 Query 428517 ATCCATCCATAATATTAGGTATAGATCTTAAATTATC--ATCCACTGAGAATGATATTAG 428574 | ||||| | | ||| || |||||||| | |||| ||| ||| ||| ||| || Sbjct 217432 AACCATCTAATAAATTTGGAATAGATCTAGTAGTATCATATCTACT--AAATAATACAAG 217375 Query 428575 TTCTTGATGAATGAAATCATAATAT 428599 ||||| |||||| |||||| ||||| Sbjct 217374 TTCTTTATGAATAAAATCAAAATAT 217350 >seq10 Length=186001 Score = 122 bits (134), Expect = 7e-22 Identities = 135/180 (75%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 930654 AAAGTATTAATTGATTTTTCTTCACCAAATATTGCCAAAGAAATGCATATTGGACATTTG 930713 |||||| | | ||||| || |||||||| |||||||||||||||||| ||||||| || Sbjct 156821 AAAGTAATTGTAGATTTCTCATCACCAAACATTGCCAAAGAAATGCATGTTGGACACTTA 156880 Query 930714 CGTTCTACCATTATTGGAGAATCTTTATGTAGATTATATGAATATTGTGGAAGTAAAGTT 930773 | ||||| |||||||| || | ||||||| | |||||||| ||| | |||| Sbjct 156881 AGATCTACAATTATTGGTGATACAACATGTAGAATTCTTGAATATTTAGGATTTGAAGTA 156940 Query 930774 CATCGAGTCAATCATATTGGTGATTGGGGAACACAATTTGGTATGTTAATTGCTTATATA 930833 |||| ||||| |||| |||||||| || |||||||| ||| | |||| ||| || Sbjct 156941 TTAAGAGTTAATCACGTTGGAGATTGGGGTACTCAATTTGGCATGCTTATTGAATATTTA 157000 >seq7 Length=822230 Score = 122 bits (134), Expect = 7e-22 Identities = 151/204 (74%), Gaps = 6/204 (3%) Strand=Plus/Minus Query 563274 AAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTT 563333 ||| | ||| | |||| ||| |||||||||| |||||||| ||| || | |||||| Sbjct 557629 AAGTGGACTCTTTTTG--AATGTTGTAATCAGAGAGAGTTCTACCATCCTCTAATTGTTT 557572 Query 563334 TCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTG 563393 ||| ||||| || | | ||| |||||||| || |||||||| ||||||||||| ||| Sbjct 557571 TCCTGCAAAGATCAAACGTTGTTGATCAGGTGGGATTCCTTCCTTATCTTGAATCTTTGC 557512 Query 563394 TTTTACTGCCTCAATTGTATCAGTGTGAGTACA--TTCGAGAGTAACAGTTTTACCAGTA 563451 || || |||||||||||| || || || ||| | ||| | ||| || || || Sbjct 557511 CTTAACATTCTCAATTGTATC--TGAAGGTTCAACTTCCAAAGTGATAGTCTTTCCTGTC 557454 Query 563452 AGAGTTTTAACGAAAATTTGCATA 563475 | ||| ||||| ||||| |||||| Sbjct 557453 AAAGTCTTAACAAAAATCTGCATA 557430 Score = 122 bits (134), Expect = 7e-22 Identities = 151/204 (74%), Gaps = 6/204 (3%) Strand=Plus/Minus Query 563274 AAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTT 563333 ||| | ||| | |||| ||| |||||||||| |||||||| ||| || | |||||| Sbjct 558530 AAGTGGACTCTTTTTG--AATGTTGTAATCAGAGAGAGTTCTACCATCCTCTAATTGTTT 558473 Query 563334 TCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTG 563393 ||| ||||| || | | ||| |||||||| || |||||||| ||||||||||| ||| Sbjct 558472 TCCTGCAAAGATCAAACGTTGTTGATCAGGTGGGATTCCTTCCTTATCTTGAATCTTTGC 558413 Query 563394 TTTTACTGCCTCAATTGTATCAGTGTGAGTACA--TTCGAGAGTAACAGTTTTACCAGTA 563451 || || |||||||||||| || || || ||| | ||| | ||| || || || Sbjct 558412 CTTAACATTCTCAATTGTATC--TGAAGGTTCAACTTCCAAAGTGATAGTCTTTCCTGTC 558355 Query 563452 AGAGTTTTAACGAAAATTTGCATA 563475 | ||| ||||| ||||| |||||| Sbjct 558354 AAAGTCTTAACAAAAATCTGCATA 558331 Score = 113 bits (124), Expect = 4e-19 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 563284 TCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAA 563343 ||||| ||| ||||| |||| |||||||| ||| || | ||||||||| ||||| Sbjct 557849 TCTTTTTGAATGTTGTAGTCAGAGAGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAG 557790 Query 563344 ATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCC 563403 || | | ||| |||||||| || ||||| || ||||||||||| ||| || || | Sbjct 557789 ATTAAACGTTGTTGATCAGGTGGGATTCCCTCCTTATCTTGAATCTTTGCCTTAACATTC 557730 Query 563404 TCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACG 563463 ||||||||||| | | | ||| | ||| | ||| || || || | ||| |||||| Sbjct 557729 TCAATTGTATCTGAAGGCTCAACTTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACG 557670 Query 563464 AAAATTTGCATA 563475 ||||| |||||| Sbjct 557669 AAAATCTGCATA 557658 >seq1 Length=1198458 Score = 116 bits (128), Expect = 3e-20 Identities = 273/401 (68%), Gaps = 12/401 (3%) Strand=Plus/Plus Query 344255 TTTTATCTCCCACCATTTGTTTGAGACGTTGATAATATGTTGGACCAATGAATATTTTAA 344314 ||||||| | ||||| ||||| || | ||||| || ||||| ||||| || ||| | Sbjct 750865 TTTTATCGTCAACCATATGTTTTAGTCTCTGATAGTAAGTTGGCCCAATAAAGATTCTCG 750924 Query 344315 CTTCCATTCTTTGTCCCGTCATTCCATTATACATTGTTTCATTTCCCCATGCTTCATGT- 344373 |||| ||| | |||||| ||||| |||||| ||||||||| || ||| || Sbjct 750925 ACTCCAATCTCTTTCCCGTATGGCCATTGTACATTACTTCATTTCC--ATTTTTC-TGAA 750981 Query 344374 -CCTAAAGCTACTAAATCATCATTAATTTTATTAATAT-TAACTCCTGTAAATGGAGTTG 344431 || | ||| || | | | | | || | | ||| | ||||| ||||||| Sbjct 750982 ACCCGGAACTATGTAAACGGCTAGATATCTCTTCAACTGTAATTTTCGTAAAAGGAGTTG 751041 Query 344432 CATCTCCATATACCCCTTTAATTGCACAAACTTTACCTAGTAAACATTCAATTAATTGAC 344491 |||| || | | |||| |||||| || |||| || || | |||||||||||| || | Sbjct 751042 CATCACCCTCCAATCCTTGAATTGCGCACGCTTTGCCAAGCAGACATTCAATTAAATGGC 751101 Query 344492 CTATCGTCATACGTTTGGGCATACAATTAGGATTAATAATAATATCAGGAATTAATCCTG 344551 | || |||||||| || ||| || |||||| |||||||| || |||| |||||| Sbjct 751102 CAATTGTCATACGCGAAGGAATAGCATGAGGATTCATAATAATGTCTGGAA-TAATCC-C 751159 Query 344552 ATTTTGTG--AATGGAAGATCTGCA-CGATGAATTTTAAATCCAACTGTTCCTTTTTGTC 344608 || ||||| ||||| | ||| || || || || | || | ||| || ||||| | Sbjct 751160 ATCTTGTGTAAATGGCATATCCTCAGTTCTGTATGTT-ATGCCGATTGTACCCTTTTGGC 751218 Query 344609 CAGCTCTTGATGAGAATTTATCACCTACTGCTGGAATTCTT 344649 || ||| |||| || ||||| || || || |||||| Sbjct 751219 CATGTCTAGATGCAAACTTATCTCCAACATGAGGTATTCTT 751259 Score = 104 bits (114), Expect = 2e-16 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 563293 ATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTT 563352 |||||||| |||| ||||||||| |||||| | ||| ||||| ||||| || || | Sbjct 466715 ATATTGTAGTCAGATAGAGTTCTACCATCTTCCAATTGCTTTCCAGCAAAGATCAGACGC 466774 Query 563353 TGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTA 563412 || |||||||||||||| || || ||||| || || ||| ||||| |||||| ||| Sbjct 466775 TGTTGATCAGGAGGAATACCCTCCTTATCCTGGATCTTTGCCTTTACATTCTCAATAGTA 466834 Query 563413 TCAGTGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGC 563472 || | | | ||| | || | || || || || | |||||| || ||||||||| Sbjct 466835 TCGGAAGGTTCAACTTCCAATGTGATGGTCTTTCCTGTTAAAGTTTTGACAAAAATTTGC 466894 Query 563473 AT 563474 || Sbjct 466895 AT 466896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029295048078820