Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001305475.1_202015-10- 01] 18 sequences; 9,085,686 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq2 158 2e-33 seq7 154 3e-32 seq1 138 2e-27 >seq2 Length=1258884 Score = 158 bits (174), Expect = 2e-33 Identities = 547/849 (64%), Gaps = 26/849 (3%) Strand=Plus/Plus Query 38833 TTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAAT 38892 |||| |||||| |||| | |||||||| ||||| ||||| |||| | ||| || | | Sbjct 87481 TTTGATATTCACCAACTCTCTTTTCGAAGAAGTTAGTTTTACCTTGAAGTGAAATAAGGT 87540 Query 38893 TCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATC-AATACATATAAT 38951 ||| ||||||| ||||| || || |||||| |||| || || | | | Sbjct 87541 CCATCCAATCAAAAGGATTAGAAACGTTGTAG-ATTTTTGGAATATCCAAGGCAAAAAGT 87599 Query 38952 AATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCAC-AATTCATACCCAATAA 39010 |||||||| || |||||||||| |||||| ||| || || | |||||||||| ||||| Sbjct 87600 AATCTATCAGCAACAAATTCAATATATTGGGCCAT-AAGTCTCGAATTCATACC-AATAA 87657 Query 39011 TTTAAATGGTAATGCA-TCATCAATAAATTCtttttctatttctacagcttgtttaatta 39069 | || | || | ||| || ||| | | |||| | ||| ||||||| | || | Sbjct 87658 GATCAACAGGAAGAGAGTCACAAAGAAAGTTTCTTTCAACTTCAACAGCTTCTGATATGA 87717 Query 39070 tcataattatattattttt--tgataatttatatttaatatgattcgcatataGTAAACA 39127 | | || || | | || ||||||| |||||| || ||||| |||||| Sbjct 87718 T--TTGTTGTACTCTAGGAGCTGGTAATTTAAATTTAAGGGCTTT---ATATATTAAACA 87772 Query 39128 TGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCC 39187 |||||||| | ||| | |||||| || | | |||| ||||||| ||| || | ||| Sbjct 87773 AGCAAAATCAGCATGGAGACCTTCATCACGACTAATAAGTTCATTAGAAAATGTGAGTCC 87832 Query 39188 TGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATAT 39247 ||||| | ||| | |||||||||||||| |||| ||| |||| |||||| | || Sbjct 87833 AGGCATAAGTCCACGTTTTTTAAGCCAAAAAATTGCACAAAAGCTACCAGAAAATAGAAT 87892 Query 39248 ACCCTCCACACACGCA-AATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAAA 39306 || || ||| | || ||| | || |||||| | |||| | | | || | Sbjct 87893 TCCTTCAACAG-CACAGAATCCAATAATTCTTTCAGCAAAAGATCGCTCAGAATTCA--- 87948 Query 39307 TCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAA 39366 |||| || | ||||| |||||||| ||||| | || |||| || |||| || Sbjct 87949 TCCATTTAGTTGCCCATTCTGCTTTCTTTTTTACAGCTTCAATATGAGAAATTGCTTCAA 88008 Query 39367 ATAATTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA--GAATACAT 39424 | | ||| | ||||| | Sbjct 88009 AGAG--CATTTGACGTTCTTTAATTTCAGTAATATATCTATCAATAAGTAATGAATAAGT 88066 Query 39425 TTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTGAATA 39484 |||| ||||| ||| |||| |||||||| | |||| | || ||||| | Sbjct 88067 TTCACTATGTATTTGTTCAATAGACATTTGAAAAGCATAATACATTCTAGCTTCCGGTAT 88126 Query 39485 CTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGC 39544 || | ||| || ||| | | |||| || || |||||||||||| ||| || Sbjct 88127 TTGTATTTCTCTAAGGAAATTTACTGCTAAGTTTTCCATAACAATACCATCACTTGCAGC 88186 Query 39545 GAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAGA 39604 |||||||||||||||||||| ||||||||| ||||| ||||| | | |||||||| Sbjct 88187 AAAGAATGCTAAAACATATTTGATAAAATGTCTTTCAGGGTCTTTAAGACTTTCCCAATC 88246 Query 39605 TTCAAGATCGTTTGA--TAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGGATTTT 39662 | | ||| |||| || ||| | |||||| | |||||| || ||| | | |||| Sbjct 88247 TCTAGTATC--TTGACTTAGATCAATTTCTTCAGTAACCCAAAACGACGCTTCAGCTTTT 88304 Query 39663 TTATACATT 39671 ||||||||| Sbjct 88305 TTATACATT 88313 >seq7 Length=822230 Score = 154 bits (170), Expect = 3e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| |||| ||||||||||||||||||| |||||| ||| || || || Sbjct 557888 ATACCACCTCTGAGTCTCAATACTAAATGTAAAGTAGACTCTTTTTGAATGTTGTAGTCA 557829 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || | || || |||||||| || ||||| ||||| | ||||| |||||| Sbjct 557828 GAGAGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATTAAACGTTGTTGATCAGGT 557769 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| || |||||||| || || || ||||| || |||||||| | || Sbjct 557768 GGGATTCCCTCCTTATCTTGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGCTCA 557709 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | ||| || || || || || || || |||| ||| |||||||| Sbjct 557708 ACTTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACGAAAATCTGCAT 557659 Score = 145 bits (160), Expect = 1e-29 Identities = 172/233 (74%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||||||||||| | ||||| |||||||| | |||||| ||| || ||||| Sbjct 557660 ATACCACCTCTAAGTCTCAGGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCA 557601 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || | || || |||||||| || ||||| || || | ||||| |||||| Sbjct 557600 GAGAGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGT 557541 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| |||||||| || || || ||||| || |||||||| | ||| Sbjct 557540 GGGATTCCTTCCTTATCTTGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGTTCA 557481 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||||| | ||| || || || || || || || |||| || |||||||| || Sbjct 557480 ACTTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCATATT 557428 >seq1 Length=1198458 Score = 138 bits (152), Expect = 2e-27 Identities = 171/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 ||| |||||||||| |||||||||||| ||||| | ||| || ||||| || || || Sbjct 466669 ACCGCCTCTAAGTCTTAATACTAAATGCAAAGTGGACTCCTTCTGGATATTGTAGTCAGA 466728 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 || || || | || |||||||| || |||||||| || | | |||||| ||||| || Sbjct 466729 TAGAGTTCTACCATCTTCCAATTGCTTTCCAGCAAAGATCAGACGCTGTTGATCAGGAGG 466788 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || || || ||||| || || || |||||||| |||||||| || | ||| || Sbjct 466789 AATACCCTCCTTATCCTGGATCTTTGCCTTTACATTCTCAATAGTATCGGAAGGTTCAAC 466848 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTATT 172075 ||| | || ||||| || || ||||| ||||| | || || ||||| || || Sbjct 466849 TTCCAATGTGATGGTCTTTCCTGTTAAAGTTTTGACAAAAATTTGCATCTTCTT 466902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905135796344400