Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001305475.1_202015-10- 01] 18 sequences; 9,085,686 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq2 369 5e-97 >seq2 Length=1258884 Score = 369 bits (408), Expect = 5e-97 Identities = 1210/1864 (65%), Gaps = 35/1864 (2%) Strand=Plus/Minus Query 68367 ATCCAATGTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCGGT 68426 ||| | |||||| || ||||| | ||| || || | || ||| || || || || Sbjct 371300 ATCTACTGTAAATTGTATGGGGCGTGTCGCGCTTTGGGTCCTTAAATAATAAATGCCTGT 371241 Query 68427 TTTCAGACCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATC 68486 ||| |||||| |||| || || ||||||||| || || || | | | | | || Sbjct 371240 TTTTAGACCTTTTTTCCAACCATAAAAATGCATAGATGATAACTTTGCAAAGTTAGCATT 371181 Query 68487 GGCTATATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCAT 68546 | |||||||| |||| ||||| |||| | | | || |||||||| ||||| Sbjct 371180 TTCCATATGAATGTTCAAAGATTGCGATTGACAAACATATGGACCCCTATCTGCAGCCAT 371121 Query 68547 TTTTATAATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATC 68606 | || | ||||||| ||||||||| | ||||||| ||| || ||||| || Sbjct 371120 ATCAATTACTGTCTTTTGCTTAATTTCCCATACAGTCTTATAAAGCTCGCGTATATCTTC 371061 Query 68607 TGGAAGGCTCG---TATTTTGAATGGATCCACCATCGGATATAATTATATTCTTGATCTC 68663 |||| | |||||||||| ||| || | ||||| | | ||| | | Sbjct 371060 CGGAATTGTAAGTATATTTTGAATACTGCCATTATTTGCAATAATATTCTGCTTAAGCCT 371001 Query 68664 ATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAA 68723 ||||| ||| || ||| |||| | | || | ||||||||| |||| || Sbjct 371000 ATCATCCCATAACCCAAGCTCTAGTAAATCATTTAGCAAATGCGGATTTACTACAAAGAA 370941 Query 68724 TTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATT 68783 || ||||||| ||||||||| ||||| || |||| |||| || | | ||||| Sbjct 370940 CTCACCAGATAGTACTCTACGATGATAAATGTTCGAGGTAAATGGCTCAAAACTCTCATT 370881 Query 68784 ATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCT 68843 || || | |||||| | ||| ||||| |||||||| || | | |||| | ||| | Sbjct 370880 GTTACCTAAAATTTGCGAAGTGGATGCTGTTGGCATTGGAGATATTAATAGAGAATTACG 370821 Query 68844 AAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGA---TGG 68900 || ||||||| | || ||||||| || | |||||| ||||| |||| ||| Sbjct 370820 AATACCATGTTTGGAAATCCTATCTTTAAGCAAATCCCAATCACAAAGTCCAGAGTCTGG 370761 Query 68901 TACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTATATGT 68960 | ||| ||| | ||| |||||| ||| || ||||| ||| || || |||||| Sbjct 370760 TGTAACTCCCCACATATCAAATTGTAAAATACCCTTACTCGCAGGCGAACCGGAATATGT 370701 Query 68961 TTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAAAT 69020 ||| || || || | | ||| || || ||||| || || || | || | ||||| || Sbjct 370700 TTCGTATGGCCCGTATTTTTCTGCAAGCTCACAGCTAGCGTCGAGAGCTGCATAATAGAT 370641 Query 69021 TGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCT--AGACTATCGAATGGATAATGT 69078 ||| ||||| | ||||| | | | ||| | ||||| || | || | | Sbjct 370640 AACTTCAAAAATTTGTTTATTTAACTTCTTAGCTCCCTCAGACT--CGTACGGCATACGA 370583 Query 69079 AAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTA 69138 | | ||||| ||||| | || |||| ||||| || | || | |||||| | Sbjct 370582 AGCATCATAAAACAGTCTGCGAGCCCTTGAATGCCAATCCCCAATGGACGATGTCTTAAA 370523 Query 69139 TTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATT- 69197 || || ||| | ||| | || |||||| || || || | |||||| | ||| Sbjct 370522 TTCGATTTTTTACACTCTTTGAGAGAATAATATCCAACGTCAATCAATTTATTCAAATTC 370463 Query 69198 -TCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTCC----ATCT 69252 ||| | | || || || || |||| || ||||||||| |||| || | Sbjct 370462 CTCGTAATC--ACCTTCGTAACTTCTTTTAACTTATCAAAATCAAA-CGTCTTGTTATTT 370406 Query 69253 ATAACAAACATATTC---AGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAA 69309 || ||| | || || | | ||| || |||||||| || || || || | | Sbjct 370405 TTATCAACGAATTTTGGAAGGCCAATAGACGCCAGATTACAGACGGCAACTTCGTCCGTG 370346 Query 69310 TTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGC 69369 | | |||| ||| || ||||| |||| ||||| | ||||| |||| ||||| | Sbjct 370345 CTAGTGTATTCTATGATTTCTGTGCATAAGTTACTTGAAACAATAGTTCCCAAATTTTTC 370286 Query 69370 TGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATC 69429 || ||||| || | || || || || ||| |||||| || || || || ||||| Sbjct 370285 TGGTTACTTTTGCTATTTGCAGCATCTTTATAACAAATAAATGGTGTCCCCGTCTCAATT 370226 Query 69430 TGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGT---CTTGTAACGC 69486 |||| | | || | ||||| | || || || || | ||| | || Sbjct 370225 TGAGCCTGTAAGATTAAGAACCAAAGTTTCTGCGCTTTCAT--CGTTTTCCTTCCACGGC 370168 Query 69487 TTCTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAAT 69546 | | ||| ||||| | | ||||||| | || ||||| ||||||||||| | |||| Sbjct 370167 CT-TGTTTCTCATACTCTTCATATAGCTTCTTAAAATCATCGCCCCAAACATCTTGCAAT 370109 Query 69547 CCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATA 69606 || ||||||| ||| ||||| | | ||| | | ||| | || ||||| || ||| Sbjct 370108 CCCCTGCATTCATCTGGGCACATTAGAGTCCAATCTTGATCCTTCTCAACTCTTTCCATG 370049 Query 69607 AATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCT 69666 || ||||| |||| |||||| || ||||||||| | ||| | ||||| ||||| Sbjct 370048 AACAGATCAGGAACCCAAAGGGCAGGAAAGAGATCGCGACATCTCATCTCTTCCTTTCCG 369989 Query 69667 GTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATC 69726 ||| || | | || | |||||| | || |||| ||||| || || | ||| || Sbjct 369988 TGATTCTTCCTGATTTCAATAAACTCTACAACATCAACGTGCCACGGCTCCAAATAAATT 369929 Query 69727 GCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAG 69786 || ||| | || || || ||| || ||||| || || || ||||||| |||||| Sbjct 369928 GCAATGGCACCTTTACGCTTCCCTCCACCTTGATCAATATACCTAGCAGTGTCATTATAA 369869 Query 69787 ACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCT 69846 || | |||||||||||| | ||||||||| | ||||||||||| |||||| || Sbjct 369868 ACGCGCAGCATCGGAATTAATCCATTAGATCTCCCATTTGTTCCTCGAATATATGAACCA 369809 Query 69847 CTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTA--GAGATTAGAG 69904 || | | ||||||||| | | | || | || || || | ||| | || | | Sbjct 369808 GTTCCTCTAATATTACTCACTGCCACCCCAAGACCACCCGCAGTCTTACTAATGTTTGCG 369749 Query 69905 CACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAA 69964 || ||| | ||||||| | ||||| | ||| ||| ||| || | || | || Sbjct 369748 CATTTAGTT--AGTGTGTCAAAGATACCGTTTATTGAATCTTCTGGAATCCTGAGTAAAA 369691 Query 69965 AACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAG 70024 |||| ||||||||| | || ||| || | |||||| | ||| || | ||| |||| Sbjct 369690 AACAAGATGACATTTGAGGTCGTGGAGTGCCTGAATTAAAGAGTGTGGGTGTTGCATGAG 369631 Query 70025 TGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATC-CCACTGA 70083 | || |||||| || | || | |||||||||| || | ||| ||||| |||| | Sbjct 369630 TAAAATATTTTTGCGATAACAACTCATATGTTTCAAGTGCAGCTTCAATATCACCAC-AA 369572 Query 70084 TGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTT 70143 ||||| || | ||| ||||||| | ||| || |||| ||| || ||| || | Sbjct 369571 TGAATACCACAAGAGACCCGCATCAGAAGATGTTGTGGTCTTTCCACAACTTTGTTGTCA 369512 Query 70144 ATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCT 70203 ||||| | || || ||| |||| |||||||| || ||||||| | |||| ||| || Sbjct 369511 ATTTTAAGAAGATAGGATCTTTCTAGAGTTTTGAAGGCAAAATAATCGTATTCAAAATC- 369453 Query 70204 CTTT 70207 |||| Sbjct 369452 CTTT 369449 Score = 259 bits (286), Expect = 7e-64 Identities = 592/878 (67%), Gaps = 15/878 (2%) Strand=Plus/Plus Query 39302 TCTTCTTG--TGAC-ATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAA 39358 || ||||| |||| |||||||| |||| ||||||||||| | || ||||| || Sbjct 87453 TCATCTTGATTGACCATAACTCCAGCCATTTGATATTCACCAACTCTCTTTTCGAAGAAG 87512 Query 39359 TTAGTTTTGCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAt 39418 |||||||| |||| | ||| ||| ||||| ||||||| ||||||| | || || Sbjct 87513 TTAGTTTTACCTTGAAGTGAAATAAGGTCCATCCAATCAAAAGGATTAGAAACGTTGTAG 87572 Query 39419 ttttttttAA-ATCCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTT 39477 ||||| || |||| || | ||| |||||||| ||||||||||| || ||| Sbjct 87573 ATTTTTGGAATATCC-AAGGCAAAAAGTAATCTATCAGCAACAAATTCAATATATTGGGC 87631 Query 39478 CATCATTTCACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTT 39537 ||| | | ||||||| || || || | ||| || |||| || ||||| | | | Sbjct 87632 CATAAGTCTCGAATTCATACCAATAAGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCT 87691 Query 39538 TTCGATGTCTACGGCCTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGGATGCAA 39597 ||| | || || || |||| ||| || | |||| || || ||| | || Sbjct 87692 TTCAACTTCAACAGCTTCTGATATGATTTGTTGTACT--CTAGGAGCT-GGTAATTTAAA 87748 Query 39598 TAAATG---TTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAAT 39654 | | | |||| | ||||| || || || ||| ||| || || ||||| | |||||| Sbjct 87749 TTTAAGGGCTTTATATATTAAACAAGCAAAATCAGCATGGAGACCTTCATCACGACTAAT 87808 Query 39655 TAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGC 39714 | ||| ||||||||||||||||||||||| || ||||| ||||| |||||||| || || Sbjct 87809 AAGTTCATTAGAAAATGTGAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAATTGC 87868 Query 39715 AGCAAAAGAT-CCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTC 39773 | |||||| | |||||||| | || ||||| || || ||| ||| || ||| || Sbjct 87869 A-CAAAAGCTACCAGAAAATAGAATTCCTTCAACAGCACAGAATCCAATAATTCTTTCAG 87927 Query 39774 CGTAACTTGTATCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAG 39833 | || | ||| || ||||| || |||||| || |||||||| |||||| Sbjct 87928 CAAAAGATCGCTCAGAATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTTACAGCTT 87987 Query 39834 GCATTGTTTCTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTAT 39893 || || || | |||||| || ||| | | | || ||| |||| ||| Sbjct 87988 CAATATGAGAAATTGCTTCAAAGAGCATTTGACGTTCTTTAATTTCAGTAATATATCTAT 88047 Query 39894 CTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAA 39953 | || | | ||| |||| ||| || | |||||| | ||| ||||| | ||| Sbjct 88048 CAATAAGTAATGAATAAGTTTCACTATGTATTTGTTCAATAGACATTTGAAAAGCATAAT 88107 Query 39954 AACATCTTGCTTCAGTAATTTGTACCTCT-GAACAAAATCTTTCCGCCAAATTTTCATTC 40012 | ||| ||||| | ||||||| ||| || |||| || | || || ||||| | Sbjct 88108 ACATTCTAGCTTCCGGTATTTGTATTTCTCTAAGGAAAT-TTACTGCTAAGTTTTCCATA 88166 Query 40013 ACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCG 40072 || || |||||||| || ||||| ||||| || |||| ||| ||||||| | ||||| | Sbjct 88167 ACAATACCATCACTTGCAGCAAAGAATGCTAAAACATATTTGATAAAATGTCTTTCAGGG 88226 Query 40073 GGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAA 40132 | | | | | ||| || | |||||| || ||| | |||||||| |||| Sbjct 88227 TCTTTAAGACTTTCCCAATCTCTAGTATCTTGACTTAGATCAATTTCTTCAGTAACCCAA 88286 Query 40133 AACGACGCCTCTGCCTTTTTGTACATGTTCCATATATC 40170 |||||||| || || ||||| ||||| ||| ||||| Sbjct 88287 AACGACGCTTCAGCTTTTTTATACATTGACCAAATATC 88324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908645445520