Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001305475.1_202015-10- 01] 18 sequences; 9,085,686 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq2 302 6e-77 >seq2 Length=1258884 Score = 302 bits (334), Expect = 6e-77 Identities = 1178/1827 (64%), Gaps = 45/1827 (2%) Strand=Plus/Minus Query 75412 TAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAG 75471 || ||| || || || ||||||||||| |||| || || |||||||| || || Sbjct 371258 TAAATAATAAATGCCTGTTTTTAGACCTTTTTTCCAACCATAAAAATGCATAGATGATAA 371199 Query 75472 TTTGGAATAACTCGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGC 75531 || | | | | | || | |||||||| |||| || || |||| | | | Sbjct 371198 CTTTGCAAAGTTAGCATTTTCCATATGAATGTTCAAAGATTGCGATTGACAAACATATGG 371139 Query 75532 TCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAA 75591 || ||||| || ||||| | || | |||||||| ||||||||| | ||| || | Sbjct 371138 ACCCCTATCTGCAGCCATATCAATTACTGTCTTTTGCTTAATTTCCCATACAGTCTTATA 371079 Query 75592 AA-CTTGTTTGATATCATCTGGAAGATT---TGTATTTTGAATGGATCCGCCATCAGATA 75647 || || | | ||||| || |||| | | |||||||||| | ||||| | | Sbjct 371078 AAGCTCGCGT-ATATCTTCCGGAATTGTAAGTATATTTTGAATA---CTGCCATTATTTG 371023 Query 75648 TAATTGTATTCT---TGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGA 75704 ||| |||||| | | | ||||| ||| || ||| |||| | | || | Sbjct 371022 CAATAATATTCTGCTTAAGCCTATCATCCCATAACCCAAGCTCTAGTAAATCATTTAGCA 370963 Query 75705 GATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGG 75764 ||| ||||| || | || || ||||| | |||||| ||| ||||| || || Sbjct 370962 AATGCGGATTTACTACAAAGAACTCACCAGATAGTACTCTACGATGATAAATGTTCGAGG 370903 Query 75765 TATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAG 75824 || |||| || | | |||||||| || |||||||| | ||| || || || ||||| | Sbjct 370902 TAAATGGCTCAAAACTCTCATTGTTACCTAAAATTTGCGAAGTGGATGCTGTTGGCATTG 370843 Query 75825 GTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCC 75884 | | | |||| | ||| | | ||||||| | || ||||||| || | | || Sbjct 370842 GAGATATTAATAGAGAATTACGAATACCATGTTTGGAAATCCTATCTTTAAGCAAATCCC 370783 Query 75885 AATCCCAAAGATCTGA---TGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGC 75941 |||| ||||| | || |||| ||| |||| | ||| |||||| ||| || || | Sbjct 370782 AATCACAAAGTCCAGAGTCTGGTGTAACTCCCCACATATCAAATTGTAAAATACCCTTAC 370723 Query 75942 TAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCG 76001 | ||| || || |||||||||||| | ||||| ||||| || || || || || | Sbjct 370722 TCGCAGGCGAACCGGAATATGTTTCGTATGGCCCGTATTTTTCTGCAAGCTCACAGCTAG 370663 Query 76002 CCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATT-AAGATCTT-GCGCTTC 76059 | || | || | ||||| || ||| ||||| | ||||| || |||| || | Sbjct 370662 CGTCGAGAGCTGCATAATAGATAACTTCAAAAATTTGTTTATTTAACTTCTTAGCTCCCT 370603 Query 76060 AAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAAT 76119 ||||| | | || | | | | ||||| ||||| || || |||| ||||| Sbjct 370602 CAGACT--CGTACGGCATACGAAGCATCATAAAACAGTCTGCGAGCCCTTGAATGCCAAT 370545 Query 76120 ACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAAT 76179 || | || | |||||| ||| || ||| | ||| | || ||||| || Sbjct 370544 CCCCAATGGACGATGTCTTAAATTCGATTTTTTACACTCTTTGAGAGAATAATATCCAAC 370485 Query 76180 ATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAA 76239 || || | |||||| | ||| || || || || || || |||| || ||| Sbjct 370484 GTCAATCAATTTATTCAAATTCCTCGTAATCACCTTCGTAACTTCTTTTAACTTATCAAA 370425 Query 76240 ATCAAA-----TTTTCCATCTATCA-CAAACATATTAAGAGCTATAGATGCTAGATTACA 76293 |||||| | || | ||||| | || | ||| | ||||| || |||||||| Sbjct 370424 ATCAAACGTCTTGTTATTTTTATCAACGAATTTTGGAAGGCCAATAGACGCCAGATTACA 370365 Query 76294 AACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTT 76353 ||||| || || | | | | |||| ||| || || ||||||| ||||| | Sbjct 370364 GACGGCAACTTCGTCCGTGCTAGTGTATTCTATGATTTCTGTGCATAAGTTACTTGAAAC 370305 Query 76354 GATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATG-AG--TCCTTATAAAGAAC 76410 |||||||| | ||||| ||||| || |||| || || || || |||||| || Sbjct 370304 AATAGTTCCCAAATTTTTCTGGTTACT---TTTGCTATTTGCAGCATCTTTATAACAAAT 370248 Query 76411 AAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTT 76470 ||| || || || || ||||| || | | | || | ||| | | ||| || | Sbjct 370247 AAATGGTGTCCCCGTCTCAATTTGAGCCTGTAAGATTAAGAACCAAA-GTTTCT-GCGCT 370190 Query 76471 TATTATAGATTTGTATC----GCTTCTCTCTTTCATATTGTGTATATAACCGTTCAAATT 76526 | | || | ||| || || | | | | ||||| | | ||||| | | ||| | Sbjct 370189 T-TCATCGTTTTCCTTCCACGGCCT-TGTTTCTCATACTCTTCATATAGCTTCTTAAAAT 370132 Query 76527 CATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCAC 76586 |||| ||||||||||| | ||| || ||||||| || ||||| | | ||| || Sbjct 370131 CATCGCCCCAAACATCTTGCAATCCCCTGCATTCATCTGGGCACATTAGAGTCCAATCTT 370072 Query 76587 CATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTC 76646 ||| | || ||| | || ||| || |||||||| | ||| || ||| ||| ||||| | Sbjct 370071 GATCCTTCTCAACTCTTTCCATGAACAGATCAGGAACCCAAAGGGCAGGAAAGAGATCGC 370012 Query 76647 GGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAG 76706 | ||| ||||| ||||| |||||| | | || | ||||| | || |||| Sbjct 370011 GACATCTCATCTCTTCCTTTCCGTGATTCTTCCTGATTTCAATAAACTCTACAACATCAA 369952 Query 76707 AATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTA 76766 ||||| || || | ||| || || || |||| || || || || ||||| | Sbjct 369951 CGTGCCACGGCTCCAAATAAATTGCAATGGCACCTTTACGCTTCCCTCCACCTTGATCAA 369892 Query 76767 TATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCAT 76826 |||| || ||||||| ||||||||| | || ||| ||||| | || |||||| | |||| Sbjct 369891 TATACCTAGCAGTGTCATTATAAACGCGCAGCATCGGAATTAATCCATTAGATCTCCCAT 369832 Query 76827 TTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTC 76886 ||||||| |||||| ||| | | | ||||||||| | | | || | || | Sbjct 369831 TTGTTCCTCGAATATATGAACCAGTTCCTCTAATATTACTCACTGCCACCCCAAGACCAC 369772 Query 76887 CTGCCATTTTA--GAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACT 76944 | || | ||| | || | ||| ||| | ||||||| |||| || | ||| Sbjct 369771 CCGCAGTCTTACTAATGTTTGCGCATTTAGTT--AGTGTGTCAAAGATACCGTTTATTGA 369714 Query 76945 ATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATT 77004 ||| || || | || | |||||| ||||||||| | | ||| |||| ||| Sbjct 369713 ATCTTCTGGAATCCTGAGTAAAAAACAAGATGACATTTGAGGTCGTGGAGTGCCTGAATT 369654 Query 77005 AAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAAT 77064 ||| | ||| || | ||||||||| || |||||| || | | | |||||||||| Sbjct 369653 AAAGAGTGTGGGTGTTGCATGAGTAAAATATTTTTGCGATAACAACTCATATGTTTCAAG 369594 Query 77065 AACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGG 77124 | ||||| ||||| | |||||| || || ||| ||||||| | ||| || || Sbjct 369593 TGCAGCTTCAATATCACCACAATGAATACCACAAGAGACCCGCATCAGAAGATGTTGTGG 369534 Query 77125 TCGTTCTACAGTCTTATTATTTATTTTCAACAAG-TATGATTTTTCCAAAGTTTTAAAAC 77183 || ||| ||| || || | ||||| || ||| || ||| |||| | |||||| || Sbjct 369533 TCTTTCCACAACTTTGTTGTCAATTTT-AAGAAGATAGGATCTTTCTAGAGTTTTGAAGG 369475 Query 77184 CAAAATAGTTGTATGAAAAGTCTCTTT 77210 ||||||| | |||| ||| || |||| Sbjct 369474 CAAAATAATCGTATTCAAAATC-CTTT 369449 Score = 239 bits (264), Expect = 6e-58 Identities = 590/880 (67%), Gaps = 19/880 (2%) Strand=Plus/Plus Query 46315 TCTTCTTG--TGAC-ATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAA 46371 || ||||| |||| |||||||| |||| |||||||| || | || ||||| || Sbjct 87453 TCATCTTGATTGACCATAACTCCAGCCATTTGATATTCACCAACTCTCTTTTCGAAGAAG 87512 Query 46372 TTAGTTTTGCCTTCCAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAA 46431 |||||||| |||| | ||| ||| ||||| ||||||| ||||||| ||| || || Sbjct 87513 TTAGTTTTACCTTGAAGTGAAATAAGGTCCATCCAATCAAAAGGATTAGAAACGTTGTAG 87572 Query 46432 AtttttttAA-ATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTT 46490 |||||| || |||| || | ||| | |||||| ||||| ||||| ||||| Sbjct 87573 ATTTTTGGAATATCC-AAGGCAAAAAGTAATCTATCAGCAACAAATTCAATATATTGGGC 87631 Query 46491 CATCATTTCACAATTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTG 46550 ||| | | ||||||| || || || | || || |||| || |||||| | | Sbjct 87632 CATAAGTCTCGAATTCATACCAATAAGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCT 87691 Query 46551 TTCAATAGTGACAGCATCCGATATTATCGATGTTACTGTTTCCTCACTTGGTGGATGCA- 46609 ||||| ||||| || ||||| || | |||| | | |||| | | Sbjct 87692 TTCAACTTCAACAGCTTCTGATATGATTTGTTGTACTCTAGGAGC---TGGTAATTTAAA 87748 Query 46610 -TCAAATG-TTTAAACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAAT 46667 | || | |||| | |||||||| ||||||||| ||| || |||||||| | |||||| Sbjct 87749 TTTAAGGGCTTTATATATTAAACAAGCAAAATCAGCATGGAGACCTTCATCACGACTAAT 87808 Query 46668 TAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGC 46727 | ||| |||||||||||||| |||||||| |||||||| ||||| |||||||| || | Sbjct 87809 AAGTTCATTAGAAAATGTGAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAATTG- 87867 Query 46728 CGCGAAAGAT-CCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTC 46786 | | |||| | |||||||| | || ||||| ||||| |||| | | || ||| || Sbjct 87868 CACAAAAGCTACCAGAAAATAGAATTCCTTCAACAGCACAGAATCCAATAATTCTTTCAG 87927 Query 46787 CGTAA-CTGGCATCATTATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAA 46845 | || | || ||| || ||||| | ||||| || || || || |||||| Sbjct 87928 CAAAAGATCGC-TCAGAATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTTACAGCT 87986 Query 46846 GGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTA 46905 || || || | |||||| | | ||| | | | || ||| |||| || Sbjct 87987 TCAATATGAGAAATTGCTTCAAAGAGCATTTGACGTTCTTTAATTTCAGTAATATATCTA 88046 Query 46906 TCTATTA--AAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGT 46963 || || | || || ||| |||| ||| || | |||||||| ||| ||||| | | Sbjct 88047 TCAATAAGTAATGA--ATAAGTTTCACTATGTATTTGTTCAATAGACATTTGAAAAGCAT 88104 Query 46964 AAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCAT 47023 || | ||| ||||| | || |||| ||| || || | | | || || || Sbjct 88105 AATACATTCTAGCTTCCGGTATTTGTATTTCTCTAAGGAAATTTACTGCTAAGTTTTCCA 88164 Query 47024 TCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCAT 47083 | || || |||||||| |||||||| ||||| || |||| ||| ||||||| | ||||| Sbjct 88165 TAACAATACCATCACTTGCAGCAAAGAATGCTAAAACATATTTGATAAAATGTCTTTCAG 88224 Query 47084 CGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCC 47143 | | || | | ||| || | |||||| || ||| | |||||||| || Sbjct 88225 GGTCTTTAAGACTTTCCCAATCTCTAGTATCTTGACTTAGATCAATTTCTTCAGTAACCC 88284 Query 47144 AGAATGACGCCTCTGCTTTTTTATACATATTCCATATATC 47183 | || ||||| || |||||||||||||| ||| ||||| Sbjct 88285 AAAACGACGCTTCAGCTTTTTTATACATTGACCAAATATC 88324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712934239589760