Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001306235.1_202015-10- 01] 18 sequences; 9,112,937 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq2 102 7e-17 seq1 96.9 3e-15 seq7 89.7 5e-13 >seq2 Length=1198512 Score = 102 bits (112), Expect = 7e-17 Identities = 370/572 (65%), Gaps = 13/572 (2%) Strand=Plus/Minus Query 57566 AGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGA 57625 ||| |||||| ||||| ||||| || ||||| ||||||||| |||||| | || Sbjct 62489 AGATATTTGGTCAATGTATAAAAAAGCTGAAGCGTCGTTTTGGGTTACTGAAGAAATTGA 62430 Query 57626 CCTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAA 57685 || | | ||| || |||||||| || ||||| |||| ||| ||||||| || Sbjct 62429 TCTAAGTCAAGATACTAGAGATTGGGAAAGTCTTAAAGACCCTGAAAGACATTTTATCAA 62370 Query 57686 ACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAG 57745 | | || || || || || || ||| ||||||||||||| || || || | | || Sbjct 62369 ATATGTTTTAGCATTCTTTGCTGCAAGTGATGGTATTGTTATGGAAAACTTAGCAGTAA- 62311 Query 57746 ATTTTCACA-AGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCA 57804 |||| | | |||| | ||| | |||| || ||| | ||| | |||||| || | | Sbjct 62310 ATTTCCTTAGAGAAATACAAATACCGGAAGCTAGAATGTATTATGCTTTTCAAATGTCTA 62251 Query 57805 TTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACG 57864 ||||| | | ||| |||| ||||| |||| || |||| || | | || || Sbjct 62250 TTGAACAAATACATAGTGAAACTTATTCATTACTTATTGATAGATATATTACTGA-AATT 62192 Query 57865 ACGAGAAACGT---AGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGG 57921 | | ||||| | || || | || || || || | ||||| | Sbjct 62191 A--AAGAACGTCAAATGCTCTTTGAAGCAATTTCTCATATTGAAGCTGTAAAAAAGAAAG 62134 Query 57922 CAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCA-CGTTCGCCGAGAGGCTAATC 57980 |||| ||| ||| |||||||| || | || | | || || || || | || Sbjct 62133 CAGAATGGGCAACTAAATGGATGAA----TTCTGAGCGATCTTTTGCTGAAAGAATTATT 62078 Query 57981 GCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATG 58040 | ||| || || ||||| || | ||||| || |||||| ||||| |||||| | Sbjct 62077 GGATTCTGTGCTGTTGAAGGAATTCTATTTTCTGGTAGCTTTTGTGCAATTTTTTGGCTT 62018 Query 58041 AAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAG 58100 || ||||| || || ||||| || || || ||| || || | || || || || Sbjct 62017 AAAAAACGTGGACTTATGCCTGGACTCACATTTTCTAATGAACTTATTAGTCGTGATGAA 61958 Query 58101 GGTCTCCATACTGATTTTGCGTGCCTAATGTA 58132 ||||||||| |||||||||| || |||| || Sbjct 61957 GGTCTCCATGCTGATTTTGCTTGTTTAATATA 61926 >seq1 Length=1296567 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||||||||| || || ||| | ||||| || || ||||| | || |||||||| Sbjct 544695 AAGATGCAAATTTTTGTCAAAACTTTAACAGGAAAGACCATCACATTGGAAGTTGAACCT 544636 Query 31250 TCCGACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||||| | | | || | || || || || || ||| ||||| || | || || || Sbjct 544635 TCCGATACTATTGAGAATGTAAAGGCAAAG-ATCCAGGATAAGGAGGGTATTCCTCCTGA 544577 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 || |||||||| || || ||||| || || |||||||| || ||| | || || Sbjct 544576 TCAACAGCGTCTGATCTTTGCTGGAAAGCAATTGGAAGATGGTAGAACTCTATCTGACTA 544517 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 || || || || || || ||| | ||| | ||| | ||||| || |||||| Sbjct 544516 CAATATCCAGAAGGAGTCCACTTTGCATTTAGTATTAAGACTTAGAGGCGGT 544465 >seq7 Length=873514 Score = 89.7 bits (98), Expect = 5e-13 Identities = 166/240 (69%), Gaps = 3/240 (1%) Strand=Plus/Plus Query 31184 GAAT-CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGT 31242 |||| |||| ||||| ||||| || |||||| ||||||| || || ||||| | || || Sbjct 549843 GAATACAAATATGCAGATTTTTGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGT 549902 Query 31243 TGAACCGTCCGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGC 31301 ||| || || || | | || | || || || ||| | | | ||||| || | | Sbjct 549903 TGAGCCTTCAGATACAATTGAGAATGTTAAGGCAAAGATTCAAG-ATAAGGAGGGAATCC 549961 Query 31302 CGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGA 31361 | || || || || ||| |||| || || || ||||| || || || || ||| | Sbjct 549962 CACCTGATCAACAACGTTTAATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCT 550021 Query 31362 GCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || |||||||||||||| || ||| | ||| | ||| | ||||| || || |||| Sbjct 550022 CTGACTACAACATTCAAAAAGAGTCTACTTTACATTTAGTATTGAGACTCAGAGGTGGTA 550081 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| |||||| ||||||| || || ||||| | || ||||| || || Sbjct 550081 ATGCAGATTTTCGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAGCCTTCA 550140 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | || | || || || ||| | | | |||||||| | || || || || Sbjct 550141 GATACAATTGAGAATGTTAAGGCAAAGATTCAAG-ATAAGGAAGGAATCCCACCTGATCA 550199 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 || ||| | || || || || ||||| || || || || ||| | ||||| || Sbjct 550200 ACAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTACAA 550259 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||||||||| || ||| | || | || || ||||| || ||||| Sbjct 550260 CATTCAAAAAGAGTCCACTTTACACTTAGTCCTGAGACTTAGAGGCGG 550307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766299702560