Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001306235.1_202015-10- 01] 18 sequences; 9,112,937 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2 298 7e-76 >seq2 Length=1198512 Score = 298 bits (330), Expect = 7e-76 Identities = 1183/1849 (64%), Gaps = 26/1849 (1%) Strand=Plus/Minus Query 70800 TGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAG 70859 |||||| || ||||| | ||| || || | || ||| || |||||||||||||| Sbjct 341077 TGTAAATTGTATGGGGCGTGTCGCGCTTTGGGTCCTTAAATAATAAATGCCTGTTTTTAG 341018 Query 70860 ACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTAT 70919 ||| |||| || |||||||||||| | || || | | || ||| || | || Sbjct 341017 ACCTTTTTTCCAACCATAAAAATGCATAGATGATAACTTTGCAAAGTTAGCATTTTCCAT 340958 Query 70920 GTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 70979 ||||| |||| || || |||| | | | ||||| ||||||||||| | || Sbjct 340957 ATGAATGTTCAAAGATTGCGATTGACAAACATATGGACCCCTATCTGCAGCCATATCAAT 340898 Query 70980 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA-CTCGCTTAATATCTTCTGGAA 71038 | |||||||| ||||||||| | ||| ||||||| ||||| | |||||||| |||| Sbjct 340897 TACTGTCTTTTGCTTAATTTCCCATACAGTCTTATAAAGCTCGCGT-ATATCTTCCGGAA 340839 Query 71039 -GGT--TTGTATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCAT 71095 || | |||| ||||| ||| || ||||||||| | | || | | |||| Sbjct 340838 TTGTAAGTATATTTTGAATACTGCCATTATTTGCAATAATATTCTGCTTAAGCCTATCAT 340779 Query 71096 TCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTC 71155 |||||| ||| |||| | | || | ||| ||||| ||||| || || | Sbjct 340778 CCCATAACCCAAGCTCTAGTAAATCATTTAGCAAATGCGGATTTACTACAAAGAACTCAC 340719 Query 71156 CAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTC 71215 |||| | |||||||||| ||||| || |||| | || || | |||||| || | Sbjct 340718 CAGATAGTACTCTACGATGATAAATGTTCGAGGTAAATGGCTCAAAACTCTCATTGTTAC 340659 Query 71216 CCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGAC 71275 | |||||||| | ||| ||||| || ||||| || | | |||||| ||| | || || Sbjct 340658 CTAAAATTTGCGAAGTGGATGCTGTTGGCATTGGAGATATTAATAGAGAATTACGAATAC 340599 Query 71276 CATGTGATCGG--ATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGA---TGGTAC 71330 ||||| | || || ||||||| || | ||||||| ||||| | || |||| Sbjct 340598 CATGT--TTGGAAATCCTATCTTTAAGCAAATCCCAATCACAAAGTCCAGAGTCTGGTGT 340541 Query 71331 AACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGATCCTGCATATGTATC 71390 ||| || || ||||| || || || | |||||| || Sbjct 340540 AACTCCCCACATATCAAATTGTAAAATACCCTTACTCGCAGGCGAACCGGAATATGTTTC 340481 Query 71391 GTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGT 71450 |||||| || | |||||| || || ||||| || || || | ||| ||||||| || Sbjct 340480 GTATGGCCCGTATTTTTCTGCAAGCTCACAGCTAGCGTCGAGAGCTGCATAATAGATAAC 340421 Query 71451 TTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGG-ATAATTTAAG- 71508 ||| ||||| | ||||| | | | ||| || || | || ||| ||| Sbjct 340420 TTCAAAAATTTGTTTATTTAACTTCTTAGCTCCCTCAGACTCGTACGGCATA--CGAAGC 340363 Query 71509 AGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTA 71568 | ||||| |||||| | ||||||| |||||| || | || | ||||| ||| Sbjct 340362 ATCATAAAACAGTCTGCGAGCCCTTGAATGCCAATCCCCAATGGACGATGTCTTAAATTC 340303 Query 71569 GAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG 71628 || ||| | ||| | || |||||| || || || | |||||| | ||| || Sbjct 340302 GATTTTTTACACTCTTTGAGAGAATAATATCCAACGTCAATCAATTTATTCAAATTCCTC 340243 Query 71629 ACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAA--TCTCCCATCTATTACAA 71686 || || || || || |||| || ||||||||| ||| | ||| | Sbjct 340242 GTAATCACCTTCGTAACTTCTTTTAACTTATCAAAATCAAACGTCTTGTTATTTTTATCA 340183 Query 71687 ACACGTT---CAAGG-CAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCA 71742 || || |||| ||| ||| ||||||||||| ||||| || || | | | Sbjct 340182 ACGAATTTTGGAAGGCCAATAGACGCCAGATTACAGACGGCAACTTCGTCCGTGCTAGTG 340123 Query 71743 TATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 71802 |||| ||| ||||| ||||| | ||||| | || ||||| ||||||| || ||| Sbjct 340122 TATTCTATGATTTCTGTGCATAAGTTACTTGAAACAATAGTTCCCAAATTTTTCTGGTTA 340063 Query 71803 CTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGAT 71862 || || | || ||||| |||||| |||||| || || || || ||||| |||| Sbjct 340062 CTTTTGCTATTTGCAGCATCTTTATAACAAATAAATGGTGTCCCCGTCTCAATTTGAGCC 340003 Query 71863 TCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATATTCTTGTATCTCTTTTCTCT 71921 | || || ||| | | || | || || || | ||| | | || | | Sbjct 340002 TGTAAGATTAAGAACCA-AAGTTTCTGCGCTTTCATCGTTTTCCTTCCACGGCCTTGTTT 339944 Query 71922 TTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACA 71981 || || | | ||||| | || || || |||||| ||| | ||||| || Sbjct 339943 CTCATACTCTTCATATAGCTTCTTAAAATCATCGCCCCAAACATCTTGCAATCCCCTGCA 339884 Query 71982 TTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATC 72041 ||||| || ||||| | | ||| ||| ||| | | |||| || ||| || ||||| Sbjct 339883 TTCATCTGGGCACATTAGAGTCCAATCTTGATCCTTCTCAACTCTTTCCATGAACAGATC 339824 Query 72042 AGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTT 72101 ||||| |||||| || ||| ||||| | ||| ||| || ||||| |||||| Sbjct 339823 AGGAACCCAAAGGGCAGGAAAGAGATCGCGACATCTCATCTCTTCCTTTCCGTGATTCTT 339764 Query 72102 TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAAC 72161 | | || | ||| | | || |||| |||||||| ||||| || || || || | Sbjct 339763 CCTGATTTCAATAAACTCTACAACATCAACGTGCCACGGCTCCAAATAAATTGCAATGGC 339704 Query 72162 TCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAA 72221 || || || ||| || ||||| || || ||||| |||| ||||||||| | || Sbjct 339703 ACCTTTACGCTTCCCTCCACCTTGATCAATATACCTAGCAGTGTCATTATAAACGCGCAG 339644 Query 72222 CATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACG 72281 ||| ||||| | ||||| ||| ||||| || || ||||| ||| | | | Sbjct 339643 CATCGGAATTAATCCATTAGATCTCCCATTTGTTCCTCGAATATATGAACCAGTTCCTCT 339584 Query 72282 AATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTT 72341 |||||| || | || | || | || || || | ||| || ||||||| | Sbjct 339583 AATATTACTCACTGCCACCCCAAGACCACCCGCAGTCTTACTAATGTTTGCGCATTTAGT 339524 Query 72342 TAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGA 72401 || || ||| |||| || | ||| ||| || || | |||| |||||| || Sbjct 339523 TAGTGTGTCAAAGATACCGTTTATTGAATCTTCTGGAATCCTGAGTAAAAAACAAGATGA 339464 Query 72402 CATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTT 72461 |||||| | || ||| || | |||||| | || || | || || ||||| |||| Sbjct 339463 CATTTGAGGTCGTGGAGTGCCTGAATTAAAGAGTGTGGGTGTTGCATGAGTAAAATATTT 339404 Query 72462 TTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTAC 72521 || || | | | || || |||| || | ||| ||||| | ||| || || Sbjct 339403 TTGCGATAACAACTCATATGTTTCAAGTGCAGCTTCAATATCACCACAATGAATACCACA 339344 Query 72522 CGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAA 72581 | ||| ||||| | | ||| || |||||||| || | ||||| | ||||| || || Sbjct 339343 AGAGACCCGCATCAGAAGATGTTGTGGTCTTTCCACAACTTTGTTGTCAATTTT-AAGAA 339285 Query 72582 G-TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 72629 | |||||| |||| | |||||| || ||||||| | |||| ||| || Sbjct 339284 GATAGGATCTTTCTAGAGTTTTGAAGGCAAAATAATCGTATTCAAAATC 339236 Score = 224 bits (248), Expect = 1e-53 Identities = 598/893 (67%), Gaps = 43/893 (5%) Strand=Plus/Plus Query 41749 GTCTTCTTGA--GAC-ATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAA 41805 ||| |||||| ||| |||||||| |||| |||||||| || | |||||||| || Sbjct 61616 GTCATCTTGATTGACCATAACTCCAGCCATTTGATATTCACCAACTCTCTTTTCGAAGAA 61675 Query 41806 ATTAGTCTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATA 41865 ||||| || |||| | ||| ||| ||||| ||||||| ||||| | ||| || || Sbjct 61676 GTTAGTTTTACCTTGAAGTGAAATAAGGTCCATCCAATCAAAAGGATTAGAAACGTTGTA 61735 Query 41866 AAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTT 41925 |||||| || |||| || ||| |||||||| || | ||||| |||||| Sbjct 61736 GATTTTTGGAATATCCAAGGCAAAAAGTAATCTATCAGCAACAAATTCAATATATTGGGC 61795 Query 41926 CATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTG 41985 ||| | | ||||||| || ||||| | ||| ||||||| || |||||| | | Sbjct 61796 CATAAGTCTCGAATTCATACCAATAAGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCT 61855 Query 41986 TTCAATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGA----T 42041 ||||| || || |||| ||| || | |||| | | | ||| | Sbjct 61856 TTCAACTTCAACAGCTTCTGATATGATTTGTTGTACTCT------AGGAGCTGGTAATTT 61909 Query 42042 ACAATAAATG--TTTAAACATCAAACATGCGAAATC-GCAGTGCAGACCCTCATCTCTAC 42098 | | | || | |||| | || ||||| || ||||| ||| || ||||| ||||| | || Sbjct 61910 AAATTTAAGGGCTTTATATATTAAACAAGCAAAATCAGCA-TGGAGACCTTCATCACGAC 61968 Query 42099 TAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATA 42158 |||| | ||| || ||||| |||||||| ||||| || ||||| |||||||||||||| | Sbjct 61969 TAATAAGTTCATTAGAAAATGTGAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAA 62028 Query 42159 TAGACGCAAATGAT-CCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTC 42217 | | | |||| | | |||||||| | |||||||| || || || |||||| ||| Sbjct 62029 TTG-CACAAAAGCTACCAGAAAATAGAATTCCTTCAACAGCACAGAATCCAATAATTCTT 62087 Query 42218 TCTCCATAA-CCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTAC 42276 || || || || | | || ||||| || ||||| || || ||||||||||| Sbjct 62088 TCAGCAAAAGATCGCTCAG-AATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTTAC 62146 Query 42277 ACAAGGCATCGTT----TCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAA 42332 | || || | || || | |||||| | ||| ||| | || ||| Sbjct 62147 A----GCTTCAATATGAGAAATTGCTTCAAAGAGCATTTGACGTTCTTTAATTTCAGTAA 62202 Query 42333 CATATGTATCGATCA--AAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTG 42390 |||| |||| || | || || ||| |||| ||| || | |||||| | ||| || Sbjct 62203 TATATCTATCAATAAGTAATGA--ATAAGTTTCACTATGTATTTGTTCAATAGACATTTG 62260 Query 42391 AAATCCGTAGAAACA-TCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTA 42449 ||| | || | ||| ||| || || | | |||| |||| || || | | |||| Sbjct 62261 AAAAGCATA-ATACATTCTAGCTTCCGGTATTTGTATTTCTCTAAGGAAATTTACTGCTA 62319 Query 42450 AATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAAT 42509 | ||||| | || || || ||||| || ||||| || || || |||| ||| ||||||| Sbjct 62320 AGTTTTCCATAACAATACCATCACTTGCAGCAAAGAATGCTAAAACATATTTGATAAAAT 62379 Query 42510 ATTTTTCGTCCGGTGTT--AATTTATTCCAATCATTGATATCTTTAGATATATCTACTTC 42567 | |||| ||| || | | | |||||| | |||||| | || ||| | ||| Sbjct 62380 GTCTTTC--AGGGTCTTTAAGACTTTCCCAATCTCTAGTATCTTGACTTAGATCAATTTC 62437 Query 42568 TTC--TACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATC 42618 ||| || | |||||| || ||||| || ||||||||||| ||| ||||| Sbjct 62438 TTCAGTAAC--CCAAAACGACGCTTCAGCTTTTTTATACATTGACCAAATATC 62488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671139048993680