Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001306235.1_202015-10- 01] 18 sequences; 9,112,937 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq7 93.3 4e-14 seq1 87.8 2e-12 >seq7 Length=873514 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/233 (69%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 26764 ACAAA-ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAA 26822 ||||| ||||| | ||||| || || || || ||||| | ||||| | ||| | || Sbjct 549847 ACAAATATGCAGATTTTTGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAG 549906 Query 26823 TCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCC 26882 | || || || ||| | || || ||||||| || || || || || || || Sbjct 549907 CCTTCAGATACAATTGAGAATGTTAAGGCAAAGATTCAAGATAAGGAGGGAATCCCACCT 549966 Query 26883 GATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGAC 26942 ||||||||| | | || | | || |||||| | || |||| ||||| || ||| Sbjct 549967 GATCAACAACGTTTAATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGAC 550026 Query 26943 TATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || |||||||||||||| |||||| | ||| | || ||||||| ||||| || Sbjct 550027 TACAACATTCAAAAAGAGTCTACTTTACATTTAGTATTGAGACTCAGAGGTGG 550079 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || || || ||||| | ||||| | ||| | || | Sbjct 550081 ATGCAGATTTTCGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAGCCTTCA 550140 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || || ||| | || || ||||||| || || ||||| || || || |||||| Sbjct 550141 GATACAATTGAGAATGTTAAGGCAAAGATTCAAGATAAGGAAGGAATCCCACCTGATCAA 550200 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | | || | | || |||||| | || |||| ||||| || || || ||| Sbjct 550201 CAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTACAAC 550260 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 ||||||||||| || ||| | || | ||||||||||||||||| |||| Sbjct 550261 ATTCAAAAAGAGTCCACTTTACACTTAGTCCTGAGACTTAGAGGCGGAA 550309 >seq1 Length=1296567 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 26763 AACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAA 26822 || || |||||| | ||||| ||||| ||||| ||||| | ||||| | ||| | ||| Sbjct 544698 AAGAAGATGCAAATTTTTGTCAAAACTTTAACAGGAAAGACCATCACATTGGAAGTTGAA 544639 Query 26823 TCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCC 26882 | ||| || || ||| | || || |||||| || || || || || ||||| Sbjct 544638 CCTTCCGATACTATTGAGAATGTAAAGGCAAAGATCCAGGATAAGGAGGGTATTCCTCCT 544579 Query 26883 GATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGAC 26942 |||||||| | || || | | || || ||| | ||||||| ||||| | ||| Sbjct 544578 GATCAACAGCGTCTGATCTTTGCTGGAAAGCAATTGGAAGATGGTAGAACTCTATCTGAC 544519 Query 26943 TATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || || || || || || ||| | ||| | || | ||||||||||| || Sbjct 544518 TACAATATCCAGAAGGAGTCCACTTTGCATTTAGTATTAAGACTTAGAGGCGG 544466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478662292300960