Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001306235.1_202015-10- 01] 18 sequences; 9,112,937 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq1 100 2e-16 seq7 84.2 2e-11 >seq1 Length=1296567 Score = 100 bits (110), Expect = 2e-16 Identities = 168/240 (70%), Gaps = 5/240 (2%) Strand=Plus/Plus Query 16702 CATTTAC-CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGT 16760 || |||| || |||| || || | ||| | ||||| ||||||||||| || || |||| Sbjct 544458 CAATTACACCGCCTCTAAGTCTTAATACTAAATGCAAAGTGGACTCCTTCTGGATATTGT 544517 Query 16761 AGTCGGCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGT 16820 |||| | | ||| | | || |||||||| || || ||| | || || |||||||| | Sbjct 544518 AGTCAGATAGAGTTCTACCATCTTCCAATTGCTTTCCAGCAAAGATCAGACGCTGTTGAT 544577 Query 16821 CCACAGGCACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCC 16878 | ||| | ||||| || || || ||||| ||| || | | | ||| ||| Sbjct 544578 CAGGAGGAATACCCTCCTTATCCTGGATCTTTGC--CTTTACATTCTCAATAGTATCGGA 544635 Query 16879 GGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 || || ||||| |||||||| ||||| || | |||||||||||||| ||||| || Sbjct 544636 AGGTTCAACTTCCAATGTGATGGTCTTTCCTGTTAAAGTTTTGACAAAAATTTGCATCTT 544695 >seq7 Length=873514 Score = 84.2 bits (92), Expect = 2e-11 Identities = 162/236 (69%), Gaps = 5/236 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| || |||| ||| | ||| | || ||||| ||||| ||||||||||| | Sbjct 550079 CCACCTCTGAGTCTCAATACTAAATGTAAAGTAGACTCTTTTTGAATGTTGTAGTCAGAG 550020 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | ||||| |||||||| || ||| | || | || ||||| || || Sbjct 550019 AGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATTAAACGTTGTTGATCAGGTGGG 549960 Query 16829 ACGCCCTCTTTGTCGGCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| || || || ||||| ||| || | | | || || ||||| Sbjct 549959 ATTCCCTCCTTATCTTGAATCTTTGC--CTTAACATTCTCAATTGTATCTGAAGGCTCAA 549902 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT-TTTGTA 16941 ||||| ||||| || ||||| |||| || || |||||||||||||| |||||| Sbjct 549901 CTTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCATATTTGTA 549846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405087911133820