Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001306235.1_202015-10- 01] 18 sequences; 9,112,937 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq2 113 1e-19 >seq2 Length=1198512 Score = 113 bits (124), Expect = 1e-19 Identities = 293/435 (67%), Gaps = 19/435 (4%) Strand=Plus/Minus Query 243314 TGTGC-GTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAAC 243372 ||||| |||||||| ||||| ||||| || || || || || || |||||||| || Sbjct 62071 TGTGCTGTTGAAGGAATTCTATTTTCTGGTAGCTTTTGTGCAATTTTTTGGCTT---AAA 62015 Query 243373 AAAGGTG---TGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGC 243429 ||| ||| | |||||||| ||| | ||||| || | || ||||| || || || Sbjct 62014 AAACGTGGACTTATGCCTGGACTCACATTTTCTAATGAACTTATTAGTCGTGATGAAGGT 61955 Query 243430 CTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCTCCAGAAC--AAGCTACCA--TT 243485 || || | || | | | || ||| ||||| | || || ||||| | Sbjct 61954 CTCCATGCTGATTTTGCTTGTTTAATATAT--AAAGCCCTTAAATTTAAATTACCAGCTC 61897 Query 243486 CGAAACGGTCAAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGA 243545 | | | || |||||||||| ||||||| |||||| |||| | || |||| || Sbjct 61896 CTAGA--GTACAACAAATCATATCAGAAGCTGTTGAAGTTGAAAGAAACTTTCTTTGTGA 61839 Query 243546 CGCTATTCCATGCCGG-CTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAAT 243604 | || |||| || | |||||||| ||||| || ||| |||| || || || |||| Sbjct 61838 CTCTCTTCC-TGTTGATCTTATTGGTATGAATTCGAGACTTATGGCCCAATATATTGAAT 61780 Query 243605 TCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAG-TGTACAACTCCAAGAAC 243663 | || || || | | | | || ||||| ||| ||| | |||||| || Sbjct 61779 TTGTTGCTGATAGATTACTTTTTGC-CTTGGATATTCCAAAAATCTACAACGTTTCTAAT 61721 Query 243664 CCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGT 243723 || |||| | ||||| || ||||| |||||||| ||||||||||||||||||||| | Sbjct 61720 CCTTTTGATTGGATGGACCTTATTTCACTTCAAGGTAAAACTAACTTCTTCGAAAAGAGA 61661 Query 243724 GTCAGTGATTATCAA 243738 || |||| |||||| Sbjct 61660 GTTGGTGAATATCAA 61646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102879745648300