Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001306235.1_202015-10- 01] 18 sequences; 9,112,937 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq4 242 3e-58 seq9 165 7e-35 seq7 123 2e-22 seq10 122 7e-22 seq1 116 3e-20 >seq4 Length=1013555 Score = 242 bits (268), Expect = 3e-58 Identities = 480/700 (69%), Gaps = 33/700 (5%) Strand=Plus/Plus Query 368481 TGAAACATTTAGAGAAAAAATGTTAAATAATAATTCTAAAATAAATTGGATGCCATCTAA 368540 |||| | || | ||| ||| | |||| ||||||| |||| |||||||| ||| | | Sbjct 796655 TGAATCTTTAAAAGATAAATTATTAATTAATAATGAAAAAACTAATTGGATTCCAAATTA 796714 Query 368541 TATTGGAACAAAACATTTTGATAATTGGCTCCAAAATTCAGTTGATTGGTGTATTTCAAG 368600 | || | |||| ||| |||||||| | ||| || | ||||||||| || | Sbjct 796715 TGTTAAAGAAAAAAGATTTCATAATTGGTTACAAGATGCTAGAGATTGGTGTGTTAGTCG 796774 Query 368601 AAGTAGGTTTTGGGGAACTCCAATTCCAGTATGGAAATCTGATGATGGTGAAGAAATTGT 368660 | | | ||||||||||| || || || ||||| ||| || ||| | | ||| Sbjct 796775 TAATCGTTTTTGGGGAACACCTATACCTATATGGGTATCAGAAGATTATACAATTATTAA 796834 Query 368661 TTGTATAGGTTCAATTAAAGAATTGCAAGAATTA---TCTGGTGTGCAAAATA------T 368711 ||||| ||| ||| ||||||| || ||| || | | || ||| | Sbjct 796835 ATGTATTGGTAGTATTGAAGAATTAAAATCTTTAGCATCCAATTTAAAAGATAAAGAAAT 796894 Query 368712 TAGTGATTTACATATTGATAAAATTGATCACATTAAAATTCC--ATCAAAGAAAGGAAAA 368769 || |||| ||||| | || |||||| | ||| ||||||| ||| |||| ||||| Sbjct 796895 TAATGATATACATCGTCATTTTATTGATTATATTGAAATTCCTGATCCAAGA--GGAAAT 796952 Query 368770 GGTTT------ATTGTCTCGAGTTGAAGGAGTTTTGGATTGCTGGTTTGAATCAGGTTCT 368823 || ||| || |||||| |||||| ||||| ||||||||||| |||||| Sbjct 796953 AATTATCCACCATTAAAAAGAATTGAAGAAGTTTTTGATTGTTGGTTTGAATCTGGTTCT 797012 Query 368824 ATGCCTTATGG-TCAAATACATTATCCATTTGATAACGCAAAATACTTTGATAATGATAA 368882 |||||||||| || | || ||||||||||||| || | ||| ||| ||||| Sbjct 797013 ATGCCTTATGCATCCATTA-ATTATCCATTTGAAAATCAAGAATTATTTAATAAT----- 797066 Query 368883 AGATTATGTGGCTGATTTTGTAACAGAATCAATTGATCAAACACGTGGTTGGTTTTATAC 368942 | ||| || | |||||||| ||| | ||||||||| | || ||||||||||| Sbjct 797067 ATATTTCCTG-CAGATTTTGTTGGTGAAGGTTTAGATCAAACAAGAGGATGGTTTTATAC 797125 Query 368943 CCTATTAGTATTATCCACAGCTATTTTCGATAAACCGGCTTTTAAAAATGTAATAGTAAC 369002 || | |||||||| ||||| | || ||| |||| |||||||||||| | || || | Sbjct 797126 ATTAATGGTATTATCAACAGCATTATTTGATCAACCAGCTTTTAAAAATATTATTGTTAA 797185 Query 369003 TGGTATTGTTAATGCATCTGATGGTCAAAAGATGTCAAAAAG--TAAGGGTAATTATTCC 369060 |||| | ||| |||||||||||| |||| ||||||||||| ||| |||||| | Sbjct 797186 TGGTTTAGTTTTAGCATCTGATGGTAAAAAAATGTCAAAAAGATTAA--AAAATTATCCT 797243 Query 369061 GATCC-TAATATTTTAATTGATAAATTTGGTGCTGATACTTTGAGATTATACCTATTGTC 369119 ||||| | | || || || |||||| |||||| ||| |||| ||||||| || | Sbjct 797244 GATCCATTAGATATT-GTTAATAAATATGGTGCAGATTCTTTAAGATTATTTTTAATTAA 797302 Query 369120 ATCACCTGTAGTAAAAGCAGAATCTATTAAATTTGATGAA 369159 ||||| || || | ||||||| || | | |||| | ||| Sbjct 797303 TTCACCAGTTGTTAGAGCAGAAACTTTAAGATTTAAAGAA 797342 Score = 123 bits (136), Expect = 2e-22 Identities = 209/300 (70%), Gaps = 2/300 (1%) Strand=Plus/Minus Query 552303 GATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATC 552362 || ||||| || ||||| | ||| | ||||| | || || || | ||| | || Sbjct 701996 GACGTTACACCCTTATCTTTAGGTATTGAAACTTTGGGTGGAGTTTTTACTCGATTAATT 701937 Query 552363 GATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAAT 552422 | |||||||| || || ||| |||||| | ||||| || || | |||| ||| Sbjct 701936 AACAGAAATACCACAATACCTACTAAAAAGAGCCAAGTATTCTCCACTGCTGCAGACAAT 701877 Query 552423 CAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAAT 552482 |||||| ||| |||| || |||| ||||||||||| |||| || |||||||| Sbjct 701876 CAAACTCAAGTTGGAATTAAAGTTTTCCAAGGAGAAAGAGAATTTGCTGCTGATAATAAG 701817 Query 552483 CAACTTGGT-ACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAAT 552541 ||||| | ||| || | | || |||||||| || || | || ||||| ||||| Sbjct 701816 TTGCTTGGACAATTTGAAATGATG-GGAATTCCTCCAGCACCCAGAGGGGTACCTCAAAT 701758 Query 552542 TGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAAATC 552601 |||||| || || ||||| ||||| ||||||||| ||||||| ||| |||||| || Sbjct 701757 TGAAGTCACCTTTGATATTGATGCAAATGGAATTATGAATGTTGGTGCAATTGATAAGTC 701698 >seq9 Length=410579 Score = 165 bits (182), Expect = 7e-35 Identities = 343/505 (68%), Gaps = 13/505 (3%) Strand=Plus/Minus Query 428100 AACCGGTTCCAATTCCTTCTGTACCATTTACAAGAATCATTGGAATGACTGGTGCATAAT 428159 |||| || |||||||| || ||||||||||| | |||||||||||| | ||| | |||| Sbjct 214826 AACCTGTACCAATTCCATCAGTACCATTTACCAAAATCATTGGAATTATTGGAACGTAAT 214767 Query 428160 ATTGTGGTTCAATCATTTTATTATCTTCATATTGTAAATGTAAAATATCAAAATCATGCT 428219 || |||||||| || ||| |||||| || ||| | | | |||| || Sbjct 214766 ATAAAGGTTCAATTTGTTGTCCATCATCATATAAATAAGTTAATAAAGGATCATCAGCCT 214707 Query 428220 CGATAAATAtttttttAGCCAATTCATCAAGTTGTGTAAAGATATATCTTGCG---CTTG 428276 | || || | | ||| | ||| | || | ||||| ||||| | || |||| Sbjct 214706 CTGGGAAAATATATCTAGTCCATTTAGATAGCTTAGTAAATATATAACGAGCAGCACTTG 214647 Query 428277 CGGAATCTTTACCTCCTGACATTCTAGTTCCAAATTGTCCATTAGGCATCAATAAATTAA 428336 | |||||| || ||| ||||| | |||||||| ||| || |||| ||| | Sbjct 214646 C---ATCTTTTCCACCTTCTTTTCTACTACCAAATTGACCACATGGTTCTAATAGATTTA 214590 Query 428337 TATTATTACTTCCCACATAATTTTGGGCCATATTAACAATGGTACTAGTTAAGGATTGTT 428396 |||||||||||| ||| ||||||| |||||||||||||| ||||| || ||| || Sbjct 214589 GATTATTACTTCCAACAAAATTTTGAGCCATATTAACAATAGTACTTTGCAATGATGATT 214530 Query 428397 CACCATGATGATATTTAGTTCTTTTTGAAACTGCACCTTGTAATTCTGATACCTTTATTT 428456 | ||||||||||| | | || | ||| ||| ||||| || | ||||| Sbjct 214529 CTCCATGATGATAAGCACTATGTTCAGCAACATAACCAGCTAATTGTG-CAACTTTA--A 214473 Query 428457 CTTCTTTATAAATACCTTCTTCTACTGATCCATAAAATACTTTGCGTTGTGATGGTTTGA 428516 ||| |||| || || || | || | || ||| |||||| | |||| ||||| | Sbjct 214472 GTTCATTATTAAGCTTTTTTTTAAATGTTGCAAAAAGTACTTTTCTTTGTCCAGGTTTTA 214413 Query 428517 ATCCATCCATAATATTAGGTATAGATCTTAAATTATC--ATCCACTGAGAATGATATTAG 428574 | ||||| | | ||| || |||||||| | |||| ||| ||| ||| ||| || Sbjct 214412 AACCATCTAATAAATTTGGAATAGATCTAGTAGTATCATATCTACT--AAATAATACAAG 214355 Query 428575 TTCTTGATGAATGAAATCATAATAT 428599 ||||| |||||| |||||| ||||| Sbjct 214354 TTCTTTATGAATAAAATCAAAATAT 214330 >seq7 Length=873514 Score = 123 bits (136), Expect = 2e-22 Identities = 149/202 (74%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 563274 AAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTT 563333 ||| | ||| | |||| ||| |||||||||| |||||||| ||| || | |||||| Sbjct 550279 AAGTGGACTCTTTTTG--AATGTTGTAATCAGAGAGAGTTCTACCATCCTCTAATTGTTT 550222 Query 563334 TCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTG 563393 ||| ||||| || | | ||| |||||||| || |||||||| ||||||||||| ||| Sbjct 550221 TCCTGCAAAGATCAAACGTTGTTGATCAGGTGGGATTCCTTCCTTATCTTGAATCTTTGC 550162 Query 563394 TTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453 || || |||||||||||| | | | ||| | ||| | ||| || || || | Sbjct 550161 CTTAACATTCTCAATTGTATCTGAAGGCTCAACTTCCAAAGTGATAGTCTTTCCTGTCAA 550102 Query 563454 AGTTTTAACGAAAATTTGCATA 563475 ||| ||||||||||| |||||| Sbjct 550101 AGTCTTAACGAAAATCTGCATA 550080 Score = 107 bits (118), Expect = 2e-17 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 563284 TCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAA 563343 ||||| ||| ||||| |||| |||||||| ||| || | ||||||||| ||||| Sbjct 550043 TCTTTTTGAATGTTGTAGTCAGAGAGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAG 549984 Query 563344 ATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCC 563403 || | | ||| |||||||| || ||||| || ||||||||||| ||| || || | Sbjct 549983 ATTAAACGTTGTTGATCAGGTGGGATTCCCTCCTTATCTTGAATCTTTGCCTTAACATTC 549924 Query 563404 TCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACG 563463 ||||||||||| | | | ||| | ||| | ||| || || || | ||| ||||| Sbjct 549923 TCAATTGTATCTGAAGGCTCAACTTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACA 549864 Query 563464 AAAATTTGCATA 563475 ||||| |||||| Sbjct 549863 AAAATCTGCATA 549852 >seq10 Length=138498 Score = 122 bits (134), Expect = 7e-22 Identities = 135/180 (75%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 930654 AAAGTATTAATTGATTTTTCTTCACCAAATATTGCCAAAGAAATGCATATTGGACATTTG 930713 |||||| | | ||||| || |||||||| |||||||||||||||||| ||||||| || Sbjct 126259 AAAGTAATTGTAGATTTCTCATCACCAAACATTGCCAAAGAAATGCATGTTGGACACTTA 126318 Query 930714 CGTTCTACCATTATTGGAGAATCTTTATGTAGATTATATGAATATTGTGGAAGTAAAGTT 930773 | ||||| |||||||| || | ||||||| | |||||||| ||| | |||| Sbjct 126319 AGATCTACAATTATTGGTGATACAACATGTAGAATTCTTGAATATTTAGGATTTGAAGTA 126378 Query 930774 CATCGAGTCAATCATATTGGTGATTGGGGAACACAATTTGGTATGTTAATTGCTTATATA 930833 |||| ||||| |||| |||||||| || |||||||| ||| | |||| ||| || Sbjct 126379 TTAAGAGTTAATCACGTTGGAGATTGGGGTACTCAATTTGGCATGCTTATTGAATATTTA 126438 >seq1 Length=1296567 Score = 116 bits (128), Expect = 3e-20 Identities = 273/401 (68%), Gaps = 12/401 (3%) Strand=Plus/Plus Query 344255 TTTTATCTCCCACCATTTGTTTGAGACGTTGATAATATGTTGGACCAATGAATATTTTAA 344314 ||||||| | ||||| ||||| || | ||||| || ||||| ||||| || ||| | Sbjct 828313 TTTTATCGTCAACCATATGTTTTAGTCTCTGATAGTAAGTTGGCCCAATAAAGATTCTCG 828372 Query 344315 CTTCCATTCTTTGTCCCGTCATTCCATTATACATTGTTTCATTTCCCCATGCTTCATGT- 344373 |||| ||| | |||||| ||||| |||||| ||||||||| || ||| || Sbjct 828373 ACTCCAATCTCTTTCCCGTATGGCCATTGTACATTACTTCATTTCC--ATTTTTC-TGAA 828429 Query 344374 -CCTAAAGCTACTAAATCATCATTAATTTTATTAATAT-TAACTCCTGTAAATGGAGTTG 344431 || | ||| || | | | | | || | | ||| | ||||| ||||||| Sbjct 828430 ACCCGGAACTATGTAAACGGCTAGATATCTCTTCAACTGTAATTTTCGTAAAAGGAGTTG 828489 Query 344432 CATCTCCATATACCCCTTTAATTGCACAAACTTTACCTAGTAAACATTCAATTAATTGAC 344491 |||| || | | |||| |||||| || |||| || || | |||||||||||| || | Sbjct 828490 CATCACCCTCCAATCCTTGAATTGCGCACGCTTTGCCAAGCAGACATTCAATTAAATGGC 828549 Query 344492 CTATCGTCATACGTTTGGGCATACAATTAGGATTAATAATAATATCAGGAATTAATCCTG 344551 | || |||||||| || ||| || |||||| |||||||| || |||| |||||| Sbjct 828550 CAATTGTCATACGCGAAGGAATAGCATGAGGATTCATAATAATGTCTGGAA-TAATCC-C 828607 Query 344552 ATTTTGTG--AATGGAAGATCTGCA-CGATGAATTTTAAATCCAACTGTTCCTTTTTGTC 344608 || ||||| ||||| | ||| || || || || | || | ||| || ||||| | Sbjct 828608 ATCTTGTGTAAATGGCATATCCTCAGTTCTGTATGTT-ATGCCGATTGTACCCTTTTGGC 828666 Query 344609 CAGCTCTTGATGAGAATTTATCACCTACTGCTGGAATTCTT 344649 || ||| |||| || ||||| || || || |||||| Sbjct 828667 CATGTCTAGATGCAAACTTATCTCCAACATGAGGTATTCTT 828707 Score = 104 bits (114), Expect = 2e-16 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 563293 ATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTT 563352 |||||||| |||| ||||||||| |||||| | ||| ||||| ||||| || || | Sbjct 544511 ATATTGTAGTCAGATAGAGTTCTACCATCTTCCAATTGCTTTCCAGCAAAGATCAGACGC 544570 Query 563353 TGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTA 563412 || |||||||||||||| || || ||||| || || ||| ||||| |||||| ||| Sbjct 544571 TGTTGATCAGGAGGAATACCCTCCTTATCCTGGATCTTTGCCTTTACATTCTCAATAGTA 544630 Query 563413 TCAGTGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGC 563472 || | | | ||| | || | || || || || | |||||| || ||||||||| Sbjct 544631 TCGGAAGGTTCAACTTCCAATGTGATGGTCTTTCCTGTTAAAGTTTTGACAAAAATTTGC 544690 Query 563473 AT 563474 || Sbjct 544691 AT 544692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029295048078820