Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001306235.1_202015-10- 01] 18 sequences; 9,112,937 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq7 109 1e-18 seq1 107 5e-18 >seq7 Length=873514 Score = 109 bits (120), Expect = 1e-18 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 |||||||| || |||||||||||||| || ||| || ||| | || || ||| | Sbjct 550105 ACAGGAAAGACTATCACTTTGGAAGTTGAGCCTTCAGATACAATTGAGAATGTTAAGGCA 550164 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||||||||| || |||||||| || || ||| | | ||||| || ||||| Sbjct 550165 AAGATTCAAGATAAGGAAGGAATCCCACCTGATCAACAACGTTTGATCTTTGCAGGAAAA 550224 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || || || ||||| || ||| | | ||||||||| | || |||||||| ||| | ||| Sbjct 550225 CAATTAGAGGATGGTAGAACTCTCTCTGATTACAACATTCAAAAAGAGTCCACTTTACAC 550284 Query 206374 CTTGTTTTGAGACTTCGA 206391 | || |||||||| || Sbjct 550285 TTAGTCCTGAGACTTAGA 550302 Score = 104 bits (114), Expect = 6e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | |||||||| || |||||||||||||| || ||| || Sbjct 549856 CAGATTTTTGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAGCCTTCAGAT 549915 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | || || ||| |||||||||||| || || ||||| || || ||| Sbjct 549916 ACAATTGAGAATGTTAAGGCAAAGATTCAAGATAAGGAGGGAATCCCACCTGATCAACAA 549975 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||| || ||||| || || || ||||| || ||| | | || |||||| | Sbjct 549976 CGTTTAATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGACTACAACATT 550035 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACT 206387 || |||||||||||| | || | || |||||||| Sbjct 550036 CAAAAAGAGTCTACTTTACATTTAGTATTGAGACT 550070 >seq1 Length=1296567 Score = 107 bits (118), Expect = 5e-18 Identities = 153/214 (71%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| |||||| | |||||||| || ||||| |||||||| ||| ||| || || | Sbjct 544684 TTTTGTCAAAACTTTAACAGGAAAGACCATCACATTGGAAGTTGAACCTTCCGATACTAT 544625 Query 206238 CGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297 || |||||| |||||| || || || || || ||| || || || | || Sbjct 544624 TGAGAATGTAAAGGCAAAGATCCAGGATAAGGAGGGTATTCCTCCTGATCAACAGCGTCT 544565 Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357 ||||| || |||||||| ||||||||||| || ||| | | || ||||| ||||||| Sbjct 544564 GATCTTTGCTGGAAAGCAATTGGAAGATGGTAGAACTCTATCTGACTACAATATCCAGAA 544505 Query 206358 AGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 ||||| ||| | || | || || |||||| || Sbjct 544504 GGAGTCCACTTTGCATTTAGTATTAAGACTTAGA 544471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181820527442578