Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001306235.1_202015-10- 01] 18 sequences; 9,112,937 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq7 107 2e-18 seq1 87.8 1e-12 >seq7 Length=873514 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 106248 AAGAGTTTAAAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAA 106307 |||| | ||| ||||| ||||||||||| || ||||| || ||||| || || ||||| Sbjct 549841 AAGAATACAAATATGCAGATTTTTGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAA 549900 Query 106308 ACAGAACCCGGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTG 106367 || || ||| | ||| | || || ||| ||| || || || || | Sbjct 549901 GTTGAGCCTTCAGATACAATTGAGAATGTTAAGGCAAAGATTCAAGATAAGGAGGGAATC 549960 Query 106368 CCCGTTGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATG 106427 || |||||||||| | | || | ||| || ||||||||||| ||| || |||| | Sbjct 549961 CCACCTGATCAACAACGTTTAATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTC 550020 Query 106428 GGCGATTACAACATACAAAAAGAATCTACACTACATTTAGTATTGAG 106474 || |||||||| |||||||| ||||| |||||||||||||||| Sbjct 550021 TCTGACTACAACATTCAAAAAGAGTCTACTTTACATTTAGTATTGAG 550067 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| ||||| ||||| || ||||| || ||||| || || ||||| || || Sbjct 550081 ATGCAGATTTTCGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAGCCTTCA 550140 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| | || || ||| ||| || || ||||| | || ||||||| Sbjct 550141 GATACAATTGAGAATGTTAAGGCAAAGATTCAAGATAAGGAAGGAATCCCACCTGATCAA 550200 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | | || | ||| || ||||||||||| ||| || |||| | ||||||||| Sbjct 550201 CAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTACAAC 550260 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 || |||||||| || || |||| ||||| |||| | |||| ||| Sbjct 550261 ATTCAAAAAGAGTCCACTTTACACTTAGTCCTGAGACTTAGAGGCGGA 550308 >seq1 Length=1296567 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 106257 AAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCC 106316 || |||||||||||||| ||||| || || || |||||||| || ||||| ||||| Sbjct 544695 AAGATGCAAATTTTTGTCAAAACTTTAACAGGAAAGACCATCACATTGGAAGTTGAACCT 544636 Query 106317 GGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGAT 106376 |||| || ||| | || || ||| || || || || || | || |||| Sbjct 544635 TCCGATACTATTGAGAATGTAAAGGCAAAGATCCAGGATAAGGAGGGTATTCCTCCTGAT 544576 Query 106377 CAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTAC 106436 ||||| | || || | ||| || || ||||| |||||| || |||| | || ||| Sbjct 544575 CAACAGCGTCTGATCTTTGCTGGAAAGCAATTGGAAGATGGTAGAACTCTATCTGACTAC 544516 Query 106437 AACATACAAAAAGAATCTACACTACATTTAGTATTGAG 106474 || || || || || || || | ||||||||||| || Sbjct 544515 AATATCCAGAAGGAGTCCACTTTGCATTTAGTATTAAG 544478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402329511738944