Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001306235.1_202015-10- 01] 18 sequences; 9,112,937 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq2 369 5e-97 >seq2 Length=1198512 Score = 369 bits (408), Expect = 5e-97 Identities = 1210/1864 (65%), Gaps = 35/1864 (2%) Strand=Plus/Minus Query 68367 ATCCAATGTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCGGT 68426 ||| | |||||| || ||||| | ||| || || | || ||| || || || || Sbjct 341083 ATCTACTGTAAATTGTATGGGGCGTGTCGCGCTTTGGGTCCTTAAATAATAAATGCCTGT 341024 Query 68427 TTTCAGACCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATC 68486 ||| |||||| |||| || || ||||||||| || || || | | | | | || Sbjct 341023 TTTTAGACCTTTTTTCCAACCATAAAAATGCATAGATGATAACTTTGCAAAGTTAGCATT 340964 Query 68487 GGCTATATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCAT 68546 | |||||||| |||| ||||| |||| | | | || |||||||| ||||| Sbjct 340963 TTCCATATGAATGTTCAAAGATTGCGATTGACAAACATATGGACCCCTATCTGCAGCCAT 340904 Query 68547 TTTTATAATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATC 68606 | || | ||||||| ||||||||| | ||||||| ||| || ||||| || Sbjct 340903 ATCAATTACTGTCTTTTGCTTAATTTCCCATACAGTCTTATAAAGCTCGCGTATATCTTC 340844 Query 68607 TGGAAGGCTCG---TATTTTGAATGGATCCACCATCGGATATAATTATATTCTTGATCTC 68663 |||| | |||||||||| ||| || | ||||| | | ||| | | Sbjct 340843 CGGAATTGTAAGTATATTTTGAATACTGCCATTATTTGCAATAATATTCTGCTTAAGCCT 340784 Query 68664 ATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAA 68723 ||||| ||| || ||| |||| | | || | ||||||||| |||| || Sbjct 340783 ATCATCCCATAACCCAAGCTCTAGTAAATCATTTAGCAAATGCGGATTTACTACAAAGAA 340724 Query 68724 TTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATT 68783 || ||||||| ||||||||| ||||| || |||| |||| || | | ||||| Sbjct 340723 CTCACCAGATAGTACTCTACGATGATAAATGTTCGAGGTAAATGGCTCAAAACTCTCATT 340664 Query 68784 ATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCT 68843 || || | |||||| | ||| ||||| |||||||| || | | |||| | ||| | Sbjct 340663 GTTACCTAAAATTTGCGAAGTGGATGCTGTTGGCATTGGAGATATTAATAGAGAATTACG 340604 Query 68844 AAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGA---TGG 68900 || ||||||| | || ||||||| || | |||||| ||||| |||| ||| Sbjct 340603 AATACCATGTTTGGAAATCCTATCTTTAAGCAAATCCCAATCACAAAGTCCAGAGTCTGG 340544 Query 68901 TACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTATATGT 68960 | ||| ||| | ||| |||||| ||| || ||||| ||| || || |||||| Sbjct 340543 TGTAACTCCCCACATATCAAATTGTAAAATACCCTTACTCGCAGGCGAACCGGAATATGT 340484 Query 68961 TTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAAAT 69020 ||| || || || | | ||| || || ||||| || || || | || | ||||| || Sbjct 340483 TTCGTATGGCCCGTATTTTTCTGCAAGCTCACAGCTAGCGTCGAGAGCTGCATAATAGAT 340424 Query 69021 TGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCT--AGACTATCGAATGGATAATGT 69078 ||| ||||| | ||||| | | | ||| | ||||| || | || | | Sbjct 340423 AACTTCAAAAATTTGTTTATTTAACTTCTTAGCTCCCTCAGACT--CGTACGGCATACGA 340366 Query 69079 AAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTA 69138 | | ||||| ||||| | || |||| ||||| || | || | |||||| | Sbjct 340365 AGCATCATAAAACAGTCTGCGAGCCCTTGAATGCCAATCCCCAATGGACGATGTCTTAAA 340306 Query 69139 TTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATT- 69197 || || ||| | ||| | || |||||| || || || | |||||| | ||| Sbjct 340305 TTCGATTTTTTACACTCTTTGAGAGAATAATATCCAACGTCAATCAATTTATTCAAATTC 340246 Query 69198 -TCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTCC----ATCT 69252 ||| | | || || || || |||| || ||||||||| |||| || | Sbjct 340245 CTCGTAATC--ACCTTCGTAACTTCTTTTAACTTATCAAAATCAAA-CGTCTTGTTATTT 340189 Query 69253 ATAACAAACATATTC---AGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAA 69309 || ||| | || || | | ||| || |||||||| || || || || | | Sbjct 340188 TTATCAACGAATTTTGGAAGGCCAATAGACGCCAGATTACAGACGGCAACTTCGTCCGTG 340129 Query 69310 TTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGC 69369 | | |||| ||| || ||||| |||| ||||| | ||||| |||| ||||| | Sbjct 340128 CTAGTGTATTCTATGATTTCTGTGCATAAGTTACTTGAAACAATAGTTCCCAAATTTTTC 340069 Query 69370 TGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATC 69429 || ||||| || | || || || || ||| |||||| || || || || ||||| Sbjct 340068 TGGTTACTTTTGCTATTTGCAGCATCTTTATAACAAATAAATGGTGTCCCCGTCTCAATT 340009 Query 69430 TGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGT---CTTGTAACGC 69486 |||| | | || | ||||| | || || || || | ||| | || Sbjct 340008 TGAGCCTGTAAGATTAAGAACCAAAGTTTCTGCGCTTTCAT--CGTTTTCCTTCCACGGC 339951 Query 69487 TTCTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAAT 69546 | | ||| ||||| | | ||||||| | || ||||| ||||||||||| | |||| Sbjct 339950 CT-TGTTTCTCATACTCTTCATATAGCTTCTTAAAATCATCGCCCCAAACATCTTGCAAT 339892 Query 69547 CCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATA 69606 || ||||||| ||| ||||| | | ||| | | ||| | || ||||| || ||| Sbjct 339891 CCCCTGCATTCATCTGGGCACATTAGAGTCCAATCTTGATCCTTCTCAACTCTTTCCATG 339832 Query 69607 AATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCT 69666 || ||||| |||| |||||| || ||||||||| | ||| | ||||| ||||| Sbjct 339831 AACAGATCAGGAACCCAAAGGGCAGGAAAGAGATCGCGACATCTCATCTCTTCCTTTCCG 339772 Query 69667 GTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATC 69726 ||| || | | || | |||||| | || |||| ||||| || || | ||| || Sbjct 339771 TGATTCTTCCTGATTTCAATAAACTCTACAACATCAACGTGCCACGGCTCCAAATAAATT 339712 Query 69727 GCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAG 69786 || ||| | || || || ||| || ||||| || || || ||||||| |||||| Sbjct 339711 GCAATGGCACCTTTACGCTTCCCTCCACCTTGATCAATATACCTAGCAGTGTCATTATAA 339652 Query 69787 ACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCT 69846 || | |||||||||||| | ||||||||| | ||||||||||| |||||| || Sbjct 339651 ACGCGCAGCATCGGAATTAATCCATTAGATCTCCCATTTGTTCCTCGAATATATGAACCA 339592 Query 69847 CTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTA--GAGATTAGAG 69904 || | | ||||||||| | | | || | || || || | ||| | || | | Sbjct 339591 GTTCCTCTAATATTACTCACTGCCACCCCAAGACCACCCGCAGTCTTACTAATGTTTGCG 339532 Query 69905 CACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAA 69964 || ||| | ||||||| | ||||| | ||| ||| ||| || | || | || Sbjct 339531 CATTTAGTT--AGTGTGTCAAAGATACCGTTTATTGAATCTTCTGGAATCCTGAGTAAAA 339474 Query 69965 AACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAG 70024 |||| ||||||||| | || ||| || | |||||| | ||| || | ||| |||| Sbjct 339473 AACAAGATGACATTTGAGGTCGTGGAGTGCCTGAATTAAAGAGTGTGGGTGTTGCATGAG 339414 Query 70025 TGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATC-CCACTGA 70083 | || |||||| || | || | |||||||||| || | ||| ||||| |||| | Sbjct 339413 TAAAATATTTTTGCGATAACAACTCATATGTTTCAAGTGCAGCTTCAATATCACCAC-AA 339355 Query 70084 TGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTT 70143 ||||| || | ||| ||||||| | ||| || |||| ||| || ||| || | Sbjct 339354 TGAATACCACAAGAGACCCGCATCAGAAGATGTTGTGGTCTTTCCACAACTTTGTTGTCA 339295 Query 70144 ATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCT 70203 ||||| | || || ||| |||| |||||||| || ||||||| | |||| ||| || Sbjct 339294 ATTTTAAGAAGATAGGATCTTTCTAGAGTTTTGAAGGCAAAATAATCGTATTCAAAATC- 339236 Query 70204 CTTT 70207 |||| Sbjct 339235 CTTT 339232 Score = 259 bits (286), Expect = 7e-64 Identities = 592/878 (67%), Gaps = 15/878 (2%) Strand=Plus/Plus Query 39302 TCTTCTTG--TGAC-ATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAA 39358 || ||||| |||| |||||||| |||| ||||||||||| | || ||||| || Sbjct 61617 TCATCTTGATTGACCATAACTCCAGCCATTTGATATTCACCAACTCTCTTTTCGAAGAAG 61676 Query 39359 TTAGTTTTGCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAt 39418 |||||||| |||| | ||| ||| ||||| ||||||| ||||||| | || || Sbjct 61677 TTAGTTTTACCTTGAAGTGAAATAAGGTCCATCCAATCAAAAGGATTAGAAACGTTGTAG 61736 Query 39419 ttttttttAA-ATCCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTT 39477 ||||| || |||| || | ||| |||||||| ||||||||||| || ||| Sbjct 61737 ATTTTTGGAATATCC-AAGGCAAAAAGTAATCTATCAGCAACAAATTCAATATATTGGGC 61795 Query 39478 CATCATTTCACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTT 39537 ||| | | ||||||| || || || | ||| || |||| || ||||| | | | Sbjct 61796 CATAAGTCTCGAATTCATACCAATAAGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCT 61855 Query 39538 TTCGATGTCTACGGCCTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGGATGCAA 39597 ||| | || || || |||| ||| || | |||| || || ||| | || Sbjct 61856 TTCAACTTCAACAGCTTCTGATATGATTTGTTGTACT--CTAGGAGCT-GGTAATTTAAA 61912 Query 39598 TAAATG---TTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAAT 39654 | | | |||| | ||||| || || || ||| ||| || || ||||| | |||||| Sbjct 61913 TTTAAGGGCTTTATATATTAAACAAGCAAAATCAGCATGGAGACCTTCATCACGACTAAT 61972 Query 39655 TAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGC 39714 | ||| ||||||||||||||||||||||| || ||||| ||||| |||||||| || || Sbjct 61973 AAGTTCATTAGAAAATGTGAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAATTGC 62032 Query 39715 AGCAAAAGAT-CCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTC 39773 | |||||| | |||||||| | || ||||| || || ||| ||| || ||| || Sbjct 62033 A-CAAAAGCTACCAGAAAATAGAATTCCTTCAACAGCACAGAATCCAATAATTCTTTCAG 62091 Query 39774 CGTAACTTGTATCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAG 39833 | || | ||| || ||||| || |||||| || |||||||| |||||| Sbjct 62092 CAAAAGATCGCTCAGAATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTTACAGCTT 62151 Query 39834 GCATTGTTTCTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTAT 39893 || || || | |||||| || ||| | | | || ||| |||| ||| Sbjct 62152 CAATATGAGAAATTGCTTCAAAGAGCATTTGACGTTCTTTAATTTCAGTAATATATCTAT 62211 Query 39894 CTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAA 39953 | || | | ||| |||| ||| || | |||||| | ||| ||||| | ||| Sbjct 62212 CAATAAGTAATGAATAAGTTTCACTATGTATTTGTTCAATAGACATTTGAAAAGCATAAT 62271 Query 39954 AACATCTTGCTTCAGTAATTTGTACCTCT-GAACAAAATCTTTCCGCCAAATTTTCATTC 40012 | ||| ||||| | ||||||| ||| || |||| || | || || ||||| | Sbjct 62272 ACATTCTAGCTTCCGGTATTTGTATTTCTCTAAGGAAAT-TTACTGCTAAGTTTTCCATA 62330 Query 40013 ACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCG 40072 || || |||||||| || ||||| ||||| || |||| ||| ||||||| | ||||| | Sbjct 62331 ACAATACCATCACTTGCAGCAAAGAATGCTAAAACATATTTGATAAAATGTCTTTCAGGG 62390 Query 40073 GGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAA 40132 | | | | | ||| || | |||||| || ||| | |||||||| |||| Sbjct 62391 TCTTTAAGACTTTCCCAATCTCTAGTATCTTGACTTAGATCAATTTCTTCAGTAACCCAA 62450 Query 40133 AACGACGCCTCTGCCTTTTTGTACATGTTCCATATATC 40170 |||||||| || || ||||| ||||| ||| ||||| Sbjct 62451 AACGACGCTTCAGCTTTTTTATACATTGACCAAATATC 62488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908645445520