Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001306235.1_202015-10- 01] 18 sequences; 9,112,937 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq2 141 1e-28 >seq2 Length=1198512 Score = 141 bits (156), Expect = 1e-28 Identities = 897/1415 (63%), Gaps = 52/1415 (4%) Strand=Plus/Plus Query 104214 TGGAAACCCCACAGTACATGTTC--ATGCGCGTGGCCATCGGTATTCATGGGGAAGACAT 104271 |||||| ||||| |||| ||| ||||| || | ||||||||| | | || || Sbjct 339309 TGGAAAGACCACA--ACATCTTCTGATGCGGGTCTCTTGTGGTATTCATTGTGGTGATAT 339366 Query 104272 TGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGG-TATGTTCATTCACGCAACAC 104330 ||| ||| | || ||||| || | | || ||| ||| || | ||| ||||||| Sbjct 339367 TGAAGCTGCACTTGAAACATATGAGTTGTTATCGCAAAAATATTTT-ACTCATGCAACAC 339425 Query 104331 CAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCA 104390 | || ||||| ||| | || || ||| |||| |||||||| ||| || | || | Sbjct 339426 CCACACTCTTTAATTCAGGCACTCCACGACCTCAAATGTCATCTTGTTTTTTACTCAGGA 339485 Query 104391 ACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCA- 104449 || || ||||| |||||||||| || || || || | || |||||| | | Sbjct 339486 TTCCAGAAGATTCAATAAACGGTATCTTTGACACACTAACTAAATG--CGCAAACATTAG 339543 Query 104450 -AAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTAT 104508 ||| || || ||| ||||| || | | || | |||| | | || ||| Sbjct 339544 TAAGACTGCGGGTGGTCTTGGGGTGGCAGTGAGTAATATTAGAGGAACTGGTTCATATAT 339603 Query 104509 TCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCAC 104568 ||| || |||||||| ||| |||| | ||||| ||||| ||||| | ||| | ||| Sbjct 339604 TCGAGGAACAAATGGGAGATCTAATGGATTAATTCCGATGCTGCGCGTTTATAATGACAC 339663 Query 104569 AGCGCGCTATGTAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGA 104625 || | ||| | |||||| ||| | || || || | || ||| | ||| | || Sbjct 339664 TGCTAGGTATATTGATCAAGGTGGAGGGAAGCGTAAAGGTGCCATTGCAATTTATTTGGA 339723 Query 104626 GCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGA 104685 ||| ||||||| ||| | | ||||| |||| | | || || || | || || Sbjct 339724 GCCGTGGCACGTTGATGTTGTAGAGTTTATTGAAATCAGGAAGAATCACGGAAAGGAAGA 339783 Query 104686 GGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGT 104745 | | | || ||||||||||| | || || ||| |||| ||||| |||||| | ||||| Sbjct 339784 GATGAGATGTCGCGATCTCTTTCCTGCCCTTTGGGTTCCTGATCTGTTCATGGAAAGAGT 339843 Query 104746 TGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGA-CAAGGCACCTGGTCTCTCCGATG 104804 |||| || | ||||| |||| | || ||||| || ||| || | |||| Sbjct 339844 TGAGAAGGATCAAGATTGGACTCTAATGTGCCCAGATGAATGCA-GGGGATTGCAAGATG 339902 Query 104805 CCGTGGGTGAGGAGTTT--GAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGAC 104862 ||| || || ||| |||| || || | |||| ||| || |||| || | | Sbjct 339903 TTTGGGGCGATGATTTTAAGAAG--CTATATGAAGAGTATGAGAAACAAGGCCGTGGAAG 339960 Query 104863 TGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCA-AGTCTCAAACCGAGACTG 104921 ||| || ||| || || | | || ||| | || |||||| ||||| | Sbjct 339961 GAAAACGATGAAAGC-GCAGAAACTTTGGTTCTTAATCTTACAGGCTCAAATTGAGACGG 340019 Query 104922 GTACACCATACATGCTTTACAAAGACGCCTGTAACCA-AAAGAGTAATCAAAAGAATTTG 104980 | ||||||| || ||| ||||| | ||| || | || ||||| || || |||||| Sbjct 340020 GGACACCATTTATTTGTTATAAAGATG-CTGCAAATAGCAAAAGTAACCAGAAAAATTTG 340078 Query 104981 GGTGTGATCAAGAGTTCC----AATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGA 105036 | || | | ||| | || | || ||||||||| | |||| || || || Sbjct 340079 G----GAACTATTGTTTCAAGTAACTTATGCACAGAAATCATAGAATACACTAGCACGGA 340134 Query 105037 TGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGAC 105096 || || || ||||| || || || || | || || || | || ||| | | | Sbjct 340135 CGAAGTTGCCGTCTGTAATCTGGCGTCTATTGGCCTTCCAAAATTCGTTGATAAAAATAA 340194 Query 105097 AAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAA 105156 ||||| ||||||| ||| || | | ||||||||||| | || | || | || Sbjct 340195 CAAGACGTTTGATTTTGATAAGTTAAAAGAAGTTACGAAGGTGATTACGAGGAATTTGAA 340254 Query 105157 CAGAGTTATTGA---TAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAG 105213 | | | ||||| | || ||| || | | ||| || | ||||| ||| | || Sbjct 340255 TAAATTGATTGACGTTGGATATTATT--CTCTCAAAGAGTG-TAAAAAATCGAATTTAAG 340311 Query 105214 ACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGA-TGTAT--TCATTCTTTGTCG 105270 ||| |||||| | || | || |||| || ||||| || ||| | | || ||| || Sbjct 340312 ACATCGTCCATTGGGGATTGGCATTCAAGGGCTCGCAGACTGTTTTATGATGCTTCGTAT 340371 Query 105271 CCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTA 105330 | | | || || || | ||| ||| | | ||| | || ||||| || || Sbjct 340372 GC---CGTACGAGTCTGAGGGAGCTAAGAAGTTAAATAAACAAATTTTTGAAGTTATCTA 340428 Query 105331 TCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTT 105390 | | || ||||| || || || | ||| | ||||| | || ||||| ||||| | Sbjct 340429 TTATGCAGCTCTCGACGCTAGCTGTGAGCTTGCAGAAAAATACGGGCCATACGAAACATA 340488 Query 105391 TGAGGGTTCTCCAGCTTCACAAGGGGTGCTT--CAATTTGATATGTGGGAAGGTGAGACC 105448 | ||||| || || | | |||| || |||||||||||||||| | || | ||| Sbjct 340489 TTCCGGTTCGCCTGC--GAGTAAGGGTATTTTACAATTTGATATGTGGGGA-GTTACACC 340545 Query 105449 AAGCT----TCACTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCG 105504 | || | | || ||||| || || || | || | | ||| |||| Sbjct 340546 AGACTCTGGACTTTGTGATTGGGATTTGCTTAAAGATAGGATTTCCAAACATGGTATTCG 340605 Query 105505 TAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAA 105564 ||| ||| | || |||||||||||||||| ||||| | ||||| || ||||| || Sbjct 340606 TAATTCTCTATTAATATCTCCAATGCCAACAGCATCCACTTCGCAAATTTTAGGTAACAA 340665 Query 105565 TGAATGCTTTGAACCCTACACGACGAACATCTATC 105599 ||| | ||||| || | || ||||||| |||| Sbjct 340666 TGAGAGTTTTGAGCCATTTACCTCGAACATTTATC 340700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260668766320