Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001306235.1_202015-10- 01] 18 sequences; 9,112,937 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1 251 2e-61 seq9 196 1e-44 seq2 194 5e-44 seq7 183 9e-41 seq4 152 2e-31 seq3 123 8e-23 seq6 100 9e-16 >seq1 Length=1296567 Score = 251 bits (278), Expect = 2e-61 Identities = 472/690 (68%), Gaps = 13/690 (2%) Strand=Plus/Plus Query 349201 TATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGT 349260 ||| || ||||||||||||||||||||||| ||||||| | | | | |||| | | || Sbjct 81725 TATTGGTATCGATTTAGGTACTACTTATTCATGTGTTGGTATCTACAAGAATGGTAGAGT 81784 Query 349261 AGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGA 349320 ||| || ||| ||||||| |||||||| | | || |||||||| || |||| || || Sbjct 81785 AGAGATTATTCCAAATGAACAAGGTAATCGTATTACACCATCATATGTATCATTCACTGA 81844 Query 349321 AACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATAC 349380 |||| | |||||||||| || || || ||||||||| || |||||| | || Sbjct 81845 TGATGAGAGATTGATTGGTGAATCAGCCAAGAATCAAGCTACTATCAATCCAGTTCAGAC 81904 Query 349381 GGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCTGA 349440 | || |||| ||| ||||||||||| | | ||| || | || ||| || Sbjct 81905 TTTGTTCGATGTAAAGAGACTTATTGGTCGTCGCTTTAAGGATGATTCCGTCCAAAAGGA 81964 Query 349441 TCTAAAACATT--TTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAG 349498 | || || || | || | | || || ||||| | || || || | Sbjct 81965 T--AAGACTTTGCTACCATATGAGATTATTAACAAAGATAGC---AAGCCTTACATACAA 82019 Query 349499 GTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTA 349558 ||| ||| ||||| | || ||||| || ||||| ||||| | ||||| || Sbjct 82020 GTTTCTGTTAAGGGTGAGAAGAAGCAATTAGCCCCAGAAGAGGTTTCAGCTATGGTCTTG 82079 Query 349559 GTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATT 349618 || || ||||||||||||||||| || ||| | ||| | ||||| |||| |||||| Sbjct 82080 GTCAAGATGAAGGAAATTGCTGAGGCTTATCTCGGTAAGGAAGTAAAGCATGCAGTTATT 82139 Query 349619 ACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATT 349678 ||||| ||||| || ||||||||||| |||||| || || || |||||||| ||| Sbjct 82140 ACTGTCCCAGCTTACTTTAATGATGCTCAGCGTCAGGCTACCAAGGATGCTGGTGCTATT 82199 Query 349679 GCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGG 349738 || || || ||||| | | || |||||||| || || || ||||||||||| | ||| Sbjct 82200 GCCGGTTTGAATGTAATTCGTATTATTAATGAGCCAACAGCAGCAGCAATTGCTTTTGGT 82259 Query 349739 CTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACT 349798 | || || | | || |||| | || || || | ||||| |||||||||||| Sbjct 82260 TTGGACAAGAAGGCTG----AGAAGAGCATTTTAGTA--TACGATTTGGGTGGTGGTACT 82313 Query 349799 TTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGT 349858 |||||||| || || | || |||| | || |||| || || || || |||| Sbjct 82314 TTTGATGTTTCTCTCTTGACCATTGATAACGGTGTTTTCGAGGTCGTTGCTACAAGTGGT 82373 Query 349859 GATACACATCTTGGTGGAGAAGATTTTGAT 349888 ||||| ||| | || || || ||||| ||| Sbjct 82374 GATACCCATTTGGGAGGTGAGGATTTCGAT 82403 Score = 192 bits (212), Expect = 2e-43 Identities = 172/216 (80%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 140522 TCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCC 140581 ||||| || | ||| | ||| ||||| || || ||||| || ||||||| |||| || Sbjct 544477 TCTTAATACTAAATGCAAAGTGGACTCCTTCTGGATATTGTAGTCAGATAGAGTTCTACC 544536 Query 140582 ATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTT 140641 |||||| | ||| |||||||||||||| ||||| || |||||||||||||| || || || Sbjct 544537 ATCTTCCAATTGCTTTCCAGCAAAGATCAGACGCTGTTGATCAGGAGGAATACCCTCCTT 544596 Query 140642 ATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAAC 140701 |||||| || || || |||||||| ||||| | ||| || ||||||||||| | ||| | Sbjct 544597 ATCCTGGATCTTTGCCTTTACATTCTCAATAGTATCGGAAGGTTCAACTTCCAATGTGAT 544656 Query 140702 TGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 |||||||| |||| ||||| |||||||| ||||| Sbjct 544657 GGTCTTTCCTGTTAAAGTTTTGACAAAAATTTGCAT 544692 Score = 179 bits (198), Expect = 1e-39 Identities = 387/574 (67%), Gaps = 15/574 (3%) Strand=Plus/Plus Query 350165 TCCAAAAATCAGA--TTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAG 350222 || |||| || || | ||||| | ||||| |||||||||||||| ||||| || || Sbjct 82678 TCAAAAAGTCTGAAGTAGATGAGATCGTTTTGGTTGGTGGTTCTACTCGTATCCCTAAGA 82737 Query 350223 TTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAATTAATCCAG 350282 ||||| || | ||||| ||| |||| || || || ||| |||||| |||| Sbjct 82738 TTCAAGCCTTGATCAAGGAGTTCTTTGATGGAAAGGAGCCAAACAGAGGAATTAACCCAG 82797 Query 350283 ATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTGGAAATAAGAGTT 350342 ||||||| || || ||||||||||| || || || ||| ||| | || | || | Sbjct 82798 ATGAAGCCGTCGCTTATGGTGCTGCCGTACAAGCTGGTATCTTAGCAGGTGA--AG-GCG 82854 Query 350343 CTAAAATTGATGATCTATTACTACTAGATGTAACTCCACTTTCGCTT--GGATTAGAAAC 350400 || |||| ||||| || | ||||| ||||| ||| ||| || | || || Sbjct 82855 GTAG------TGATTTATTATTATTGGATGTTACTCC--TTTAACTTTAGGTATTGAGAC 82906 Query 350401 TTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGTACCTACAAAAAAGTC 350460 | ||||| ||| ||||| || ||| |||||| | | ||| || || || ||| Sbjct 82907 TGTTGGTGGAGTTATGACAAAGCTCATTGGTAGAAACACTGTTGTTCCAACCAAGAAGAG 82966 Query 350461 CCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAATTCAAGTATTTGAAGG 350520 |||| ||| ||| | ||||||||||||||| ||| || || || | ||| || Sbjct 82967 CCAAGTTTTCAGTACTTACCAAGATAATCAGCCAGCTGTACTTATCCAGGTTTATGAGGG 83026 Query 350521 TGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAATTTACCCTAAGTGAAATTCC 350580 ||| ||| | ||||| ||||| ||| |||||| |||| || || ||| || Sbjct 83027 TGAGCGTCCAATGACTAAGGATAACAATCTCCTTGGAAAATTCGAGCTTTCTGGAATCCC 83086 Query 350581 ACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGATATTGATTCAAATGGTAT 350640 |||| || ||||| ||||| || ||||| || |||| || |||||| | ||||||| Sbjct 83087 ACCAGCTCCAAGAGGTGTTCCCCAAATTGAGGTTACTTTTGAAATTGATACTGATGGTAT 83146 Query 350641 TTTAAATGTTACCGCAGTTGAAAAATCAAGTGGTAAAAGTAGTAAGGTAGAAATTACTAA 350700 |||| | |||| ||| || || | ||||||| | ||| | || || || Sbjct 83147 TTTACAAGTTAGTGCAAAGGATAAGGGTACTGGTAAATCTGAGAAGATTACTATCACAAA 83206 Query 350701 TGATAAATCTAGACTTTCAAAAGAAGATATTGAG 350734 |||||| |||||| ||| | ||||| || ||| Sbjct 83207 TGATAAGGGTAGACTCTCACAGGAAGACATAGAG 83240 Score = 147 bits (162), Expect = 7e-30 Identities = 461/706 (65%), Gaps = 25/706 (4%) Strand=Plus/Minus Query 182796 TCTTCTTTAGCATACTTTTCAGCATCCATTGTCATTCTTTCTATTTCATCTTTAGAAAGA 182855 ||||||| ||| | | ||||| ||| | |||| | ||||| || || | || || Sbjct 83278 TCTTCTTCGGCAAATTGCTCAGCCTCCTTAATCATACGCTCTATGTCTTCCTGTGAGAGT 83219 Query 182856 TGACCTGCATCATTTGTAATTACTACATTACT-AGTTACTCCAGTTGATTTTTCAAGTGC 182914 ||| ||||||||| || | || | || || | ||||| || || ||| Sbjct 83218 CTACCCTTATCATTTGTGAT-AGTAATCTTCTCAGATTTACCAGTACCCTTATCCTTTGC 83160 Query 182915 GCTAACATTTAAAATACCATTAGAGTCAACATCAAATGATACTTCAATCTGTGGAACACC 182974 ||||| | ||||||||||| || |||| ||||| | || ||||| || |||||||| Sbjct 83159 ACTAACTTGTAAAATACCATCAGTATCAATTTCAAAAGTAACCTCAATTTGGGGAACACC 83100 Query 182975 TCGTGGCATTGGTGGAATTCCAGTTAAAG--TAAATTCACCTAATTTATTATTATCTTTA 183032 || ||| |||||| ||||||| |||| |||| || | ||| ||||| ||| Sbjct 83099 TCTTGGAGCTGGTGGGATTCCAG--AAAGCTCGAATTTTCCAAGGAGATTGTTATCCTTA 83042 Query 183033 GTTCTTGCTCTCTCGCCTTCATATACTTGAATAGTAACTGCTGGCTGATTATCACTATAA 183092 || ||| | ||| || ||||| || || ||| || |||||||||||||| ||| Sbjct 83041 GTCATTGGACGCTCACCCTCATAAACCTGGATAAGTACAGCTGGCTGATTATCTTGGTAA 82982 Query 183093 GTAGAAAAAACTTGCTTTTTATTAATAGGAATAGTTGAATTTCGCGGAACAATTA---CA 183149 ||| |||||||| | || || | |||| | | |||| | |||| | Sbjct 82981 GTACTGAAAACTTGGCTCTTCTTGGTTGGAACAACAGTGTTTC---TACCAATGAGCTTT 82925 Query 183150 GTCATTACTTCTCTGGCAGTTTCTAATCCTAATGATAATGGTGCTACATCTAGTAATAAT 183209 ||||| ||| | | |||| || | ||||| | ||| || | ||||| | ||||||| Sbjct 82924 GTCATAACTCCACCAACAGTCTCAATACCTAAAGTTAAAGGAGTAACATCCAATAATAAT 82865 Query 183210 AAATCTGATGTTTTATCTGATTTAATATCACTTAAAATTGCAGCTTGAACAGCTGCACCA 183269 ||||| || | || | | ||| || ||||||| || || |||||| Sbjct 82864 AAATC------ACTACCGCCTT---CACCTGCTAAGATACCAGCTTGTACGGCAGCACCA 82814 Query 183270 TATGCAACAGCTTCATCTGGGTTAATTGAACGAGATAATTCTTTGCCATTAAAAAATTCT 183329 || || || |||||||||||||||||| | | || || |||| ||| || || Sbjct 82813 TAAGCGACGGCTTCATCTGGGTTAATTCCTCTGTTTGGCTCCTTTCCATCAAAGAACTCC 82754 Query 183330 GAAAGCATTTGTTGAATTTTTGGAATTCTAGTTGAACCACCGACTAATACTACTTCATCG 183389 | || |||||| || || || | ||| |||||||| || || || | ||||| Sbjct 82753 TTGATCAAGGCTTGAATCTTAGGGATACGAGTAGAACCACCAACCAAAACGATCTCATCT 82694 Query 183390 A--TATTACTTTTACTAATTTGTGAATCTTTTAAAACTTTTTCAACAGGGTCCATAGTTT 183447 | | |||||| | ||| | ||| | ||||| || | ||| || || ||||| | Sbjct 82693 ACTTCAGACTTTT--TGATTCCAGCATCCTCCAAAACCTTCTTAACTGGCTCGATAGTCT 82636 Query 183448 TTCTAAATAAATCTATACATAACTCTTCTAATCTTGCTCTAGTTAA 183493 |||| || || || | ||||| || ||| | ||||| || || Sbjct 82635 TTCTGAACAAGTCAGCATTCAACTCATCGAATTTAGCTCTGGTCAA 82590 Score = 95.1 bits (104), Expect = 4e-14 Identities = 73/87 (84%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 267040 ATATGCCATTTAATGAAGATGGAATTAGACCTGATATTATTATTAATCCTCATGCTATTC 267099 |||||||||||| ||||||| |||| || || |||||||| |||||||||||||||| Sbjct 828627 ATATGCCATTTACACAAGATGGGATTATTCCAGACATTATTATGAATCCTCATGCTATTC 828568 Query 267100 CTAGTCGTATGACAATTGGTCAATTAA 267126 || |||||||||||||| || |||| Sbjct 828567 CTTCGCGTATGACAATTGGCCATTTAA 828541 Score = 84.2 bits (92), Expect = 7e-11 Identities = 134/189 (71%), Gaps = 5/189 (3%) Strand=Plus/Minus Query 312275 TTTATAGAAACACCTTTTCTTCCCCATCTGCCACTTCTTCCAATTCTATGTAGATATGTA 312334 ||||||| || || |||||| ||||||||||||||||||||| ||| ||||| || Sbjct 890100 TTTATAGCAATTCCAGATCTTCCAAATCTGCCACTTCTTCCAATTCGATG--GATATATA 890043 Query 312335 TTAATACATT--TTGGTATATCAAAATTAATAACTGTACTTACTTGTTGAATATCAATGC 312392 | | ||| | |||| ||| | || | |||| | |||||||| | |||||| | Sbjct 890042 ATTCTTTATTAATAGGTAGATCGTAGTTTACAACTAAGTTGACTTGTTGTACATCAATAC 889983 Query 312393 CTCTCGCAGTTACATTTGATGATATTAATACCCGCATATTTCCTACTCTAAAATCT-TCA 312451 |||| | || || || || ||||| || || | |||||| ||||||| ||| ||| Sbjct 889982 CTCTTCCCCATAAATCTGTTGTAATTAAAACTCGTGTTTTTCCTTCTCTAAACTCTCTCA 889923 Query 312452 TAATTTTTT 312460 |||| || Sbjct 889922 ATATTTCTT 889914 >seq9 Length=410579 Score = 196 bits (216), Expect = 1e-44 Identities = 346/497 (70%), Gaps = 8/497 (2%) Strand=Plus/Plus Query 67768 TTTATTGATAAAGAATTTATCCATTTCTCA--ACATACGATAATGAACGTTCTATTCCAA 67825 |||||| |||||||| || | ||| | | | ||| |||| | | |||||||||| Sbjct 214340 TTTATTCATAAAGAACTTGT--ATTATTTAGTAGATATGATACTACTAGATCTATTCCAA 214397 Query 67826 ATTTAATTGATGGTTTTAAAATTAGTTTAAGAAAAATTATCTATTCGGCATTTAAGAAAC 67885 ||||| | |||||||| ||| | | ||||||| | | | | | ||||||| ||| Sbjct 214398 ATTTATTAGATGGTTTAAAACCTGGACAAAGAAAAGTACTTTTTGCAACATTTAAAAAAA 214457 Query 67886 GTCTAACTAGTGAAATTAAAGTTGCACAATTTAGTGGTTATGTTTCAGAACATTCAGGCT 67945 || | || |||| |||||||||||||||| |||||||||| | |||||| | | Sbjct 214458 AGCTTAATAATGAACTTAAAGTTGCACAATTAGCTGGTTATGTTGCTGAACATAGTGCTT 214517 Query 67946 ATCATCACGGTGAAGC-TAGTTTAAATTCATCAATTGTAGGTTTAGCTCAGAATTTTGTT 68004 ||||||| || ||| | | || || | | ||||| | | ||||| ||||||||| Sbjct 214518 ATCATCATGGAGAATCATCATTGCAAAGTA-CTATTGTTAATATGGCTCAAAATTTTGTT 214576 Query 68005 GGATCAAATAATATTAATTTACTAGAACCAAAAGGTCAATTTGGAACTAGATTACTTGGA 68064 ||| |||||| | ||| || |||||||| ||||||||||| | |||| | || Sbjct 214577 GGAAGTAATAATCTAAATCTATTAGAACCATGTGGTCAATTTGGTAGTAGAAAAGAAGGT 214636 Query 68065 GGAAAAGATGCTGCATCTGAAAGATATATATTTACACATCTAAATACTTTAACTAGACTT 68124 ||||||||||| ||| | ||||||||||| | ||| || | |||||| | Sbjct 214637 GGAAAAGATGCAAGTGCTGCTCGTTATATATTTACTAAGCTATCTAAATGGACTAGATAT 214696 Query 68125 ATCTTTAGACAAGAAGATGATAATATTCTTGA-ATATTTAGAAGATGATGGTGATAAAGT 68183 || || | | | |||||| | || || | |||||| | |||||||| | || | Sbjct 214697 ATTTTCCCAGAGGCTGATGATCCT-TTATTAACTTATTTATATGATGATGGACAACAAAT 214755 Query 68184 TGAGCCAATCTATTATGTTCCTATTATTCCTATGATTTTAGTAAATGGTTCAAAAGGGAT 68243 ||| || | ||||| ||||| || ||||| |||||||| ||||||||| | | || || Sbjct 214756 TGAACCTTTATATTACGTTCCAATAATTCCAATGATTTTGGTAAATGGTACTGATGGAAT 214815 Query 68244 TGGCACTGGATTTAGTA 68260 ||| || || | |||| Sbjct 214816 TGGTACAGGTTGGAGTA 214832 Score = 149 bits (164), Expect = 2e-30 Identities = 196/279 (70%), Gaps = 0/279 (0%) Strand=Plus/Plus Query 54747 TAAATAAGGAGTTAGCTGATATAAATAGTAATCCACCAACAAATTGTTCAGCTGGAGTAA 54806 ||| | |||| ||| ||| ||||||| |||||||||||||||| |||||||| | Sbjct 150085 TAATTCAGGAATTAAGTGACTTAAATAGAGATCCACCAACAAATTGCTCAGCTGGTCCTA 150144 Query 54807 TAGATGATGATATTTTTCATTGGCAAGCAACAATTATGGGACCAGAAGATACCCCGTATC 54866 ||| |||||||| ||||| ||||||||||| |||||||| ||||| || | | ||| Sbjct 150145 TAGGAGATGATATGTTTCACTGGCAAGCAACTATTATGGGTCCAGATGACAGTTCATATG 150204 Query 54867 AAGGTGGTATATTTGAGTTAAGAATTGATTTTCCACAAGATTATCCATTTAAACCTCCAA 54926 || || |||| |||| ||| | || || ||||||||||| ||||| |||| Sbjct 150205 CTGGCGGAGTATTCTTTTTAAATATTCAATTCCCCAGCGATTATCCATTCAAACCACCAA 150264 Query 54927 ATGTAGTTTTTACTACAAAGATTTATCATTGTNNNNNNNNNNNNNNNNNNNNNATATGTT 54986 | || ||||||||||| || ||||| || || |||| Sbjct 150265 AAGTTAACTTTACTACAAAAATCTATCACTGCAATATAAATTCAAATGGAGCCATTTGTT 150324 Query 54987 TAGATATATTAAAAGATCAATGGAGTCCTGCACTTACTA 55025 | ||||| ||||| || ||||||||||||||||| |||| Sbjct 150325 TGGATATTTTAAAGGAACAATGGAGTCCTGCACTAACTA 150363 >seq2 Length=1198512 Score = 194 bits (214), Expect = 5e-44 Identities = 276/391 (71%), Gaps = 2/391 (1%) Strand=Plus/Minus Query 399471 TTTTGTTCTATTTATTGGTTaaaaaaaCGTTCATTAATGCCAGGACTTACTTTTTCAAAT 399530 |||||| | |||| |||| | ||||||||| | | ||||| ||||| || ||||| ||| Sbjct 62038 TTTTGTGCAATTTTTTGGCTTAAAAAACGTGGACTTATGCCTGGACTCACATTTTCTAAT 61979 Query 399531 GAATTAATATCACGCGATGAAGCTCTTCATACTGAATTTGCTGTATTATTATATAATAAA 399590 ||| | || || ||||||| ||| ||| |||| |||||| ||| ||||||| Sbjct 61978 GAACTTATTAGTCGTGATGAAGGTCTCCATGCTGATTTTGCTTGTTTAATATATAAAGCC 61919 Query 399591 CTTGANNNNNNNNNNNNNNNNTCACGAATTATGGAAATTATTAAAGAAGCAGTTGAAATT 399650 ||| | | || | |||| || |||||| |||||| || Sbjct 61918 CTTAAATTTAAATTACCAGCTCCTAGAGTACAACAAATCATATCAGAAGCTGTTGAAGTT 61859 Query 399651 GAAAAAGAATTTATATGTGATGCTCTTCCTTGTAGAT-TAATTGGAATGAATTCAACATT 399709 |||| | | ||| | ||||| |||||||| || ||| | ||||| |||||||| | | | Sbjct 61858 GAAAGAAACTTTCTTTGTGACTCTCTTCCT-GTTGATCTTATTGGTATGAATTCGAGACT 61800 Query 399710 AATAACACAATATATTGAGTTTATTGCTGATAGATTAAGTTTACAATTAGATTGTGATAA 399769 || | ||||||||||| ||| |||||||||||||| ||| || ||| | || Sbjct 61799 TATGGCCCAATATATTGAATTTGTTGCTGATAGATTACTTTTTGCCTTGGATATTCCAAA 61740 Query 399770 AATTTATAATGTTACAAATCCATTTGATTGGATGGAAATGATTAGTCTTGAAGGTAAAAC 399829 ||| || || ||| | ||||| |||||||||||||| | ||| ||| |||||||||| Sbjct 61739 AATCTACAACGTTTCTAATCCTTTTGATTGGATGGACCTTATTTCACTTCAAGGTAAAAC 61680 Query 399830 TAAtttttttGAAAAAAGAGTTGGCGAATAT 399860 ||| || || ||||| |||||||| |||||| Sbjct 61679 TAACTTCTTCGAAAAGAGAGTTGGTGAATAT 61649 Score = 168 bits (186), Expect = 2e-36 Identities = 336/490 (69%), Gaps = 12/490 (2%) Strand=Plus/Minus Query 202380 TAGATAATATATTCCAGTTTTTAGTCCTTGTTTCCAACTATAAAAATGCATATTTGTTAA 202439 || |||||| || || |||||||| |||| |||||||| ||||||||||||| || ||| Sbjct 341041 TAAATAATAAATGCCTGTTTTTAGACCTTTTTTCCAACCATAAAAATGCATAGATGATAA 340982 Query 202440 TGATTTTGCA--GTTGG-ATCTTCCATCCAAAGATTTAAACTTTGCGATTGACAAATATA 202496 |||||| ||| | || |||||| || || ||| |||||||||||||| ||| Sbjct 340981 C---TTTGCAAAGTTAGCATTTTCCATATGAATGTTCAAAGATTGCGATTGACAAACATA 340925 Query 202497 AGCTCCTCTATCTCTAGACATATCTATAAGATTTTTCATTGGT--ATCTCCCAAACAATT 202554 | || |||||| || |||||| || | | || ||| | || ||||| ||| | Sbjct 340924 TGGACCCCTATCTGCAGCCATATCAATTACTGTCTT--TTGCTTAATTTCCCATACAGTC 340867 Query 202555 TTATATTTTTCTTTTAGTCGTTTTGGTATAGTGTCGATATATTGAATACTACCTTTATTC 202614 ||||| || || || || || || |||| ||||||||| || ||||| Sbjct 340866 TTATAAAGCTCGCGTATATCTTCCGGAATTGTAAGTATATTTTGAATACTGCCATTATTT 340807 Query 202615 TGAATTATATTGTTTTTAATTGAATCATCCCAAATACCTAAAT-TAATAAGATCATTAAT 202673 ||| ||||| | |||| ||||||||| | || | | || ||| |||||| | Sbjct 340806 GCAATAATATTCTGCTTAAGCCTATCATCCCATAACCCAAGCTCTAGTAA-ATCATTTAG 340748 Query 202674 TAAATATTTATTAACAATAATAAACTCACCAGCTAGTGTTCTTCTTGAATAAATATTACT 202733 |||| ||| || | || |||||||||| |||| ||| | |||||| || Sbjct 340747 CAAATGCGGATTTACTACAAAGAACTCACCAGATAGTACTCTACGATGATAAATGTTCGA 340688 Query 202734 TGTAAATGGTTCAAAACATTCATTATTACCTAAAATTTGACTGGTACTAGCAGTTGGCAT 202793 |||||||| ||||||| ||||| |||||||||||||| || || |||||||| Sbjct 340687 GGTAAATGGCTCAAAACTCTCATTGTTACCTAAAATTTGCGAAGTGGATGCTGTTGGCAT 340628 Query 202794 AGGTGCAACTAGTAAACTATTGCGAAGCCCATATTCTTTAATACTATGTTTAAGAGTATT 202853 || | | || || | ||| |||| |||| || ||| |||| |||||| || Sbjct 340627 TGGAGATATTAATAGAGAATTACGAATACCATGTTTGGAAATCCTATCTTTAAGCAAATC 340568 Query 202854 CCAATCATAA 202863 ||||||| || Sbjct 340567 CCAATCACAA 340558 Score = 113 bits (124), Expect = 1e-19 Identities = 245/361 (68%), Gaps = 8/361 (2%) Strand=Plus/Plus Query 378117 TGGATCAAATCCATCATCTCCATATGAGAATTGAACAATTTTATCTTTATTGTTTCTTAC 378176 ||||| || ||| |||||||||||| |||||||| ||| | | | | | ||||||| Sbjct 661600 TGGATTAAGTCCGTCATCTCCATATATGAATTGAATAATCTGTCCATCACTTGTTCTTAC 661659 Query 378177 AGTCATATCATATCTAACCATTAAATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATA 378236 || |||||| | | | ||||||||||||||| | ||||| || ||||| Sbjct 661660 TGTTTGGTCATATTTGATACAAAGATCTTCTAATGCTTTCACAAGTCTTCTTTGCATATA 661719 Query 378237 ACCAGTTTGACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCATG 378296 || |||| | || ||||| || ||||||| || || | | || ||||| ||| Sbjct 661720 TCCTGTTTCAGCTGTCTTAACAGCTGTATCAACTAGTCCCTCTCTCCCTGACATTGTATG 661779 Query 378297 GAAGAATAATTCAGTAGG-AGTAAGTCCACCAATAAATGAACTCTCAATAAATCCTCTTG 378355 |||||| |||||| ||| |||| ||| || ||| | | | | |||||||| | Sbjct 661780 GAAGAAAAATTCATCAGGTTGTAA-TCCTGAAAAAAAGCTATTACCTACAAATCCTC-TA 661837 Query 378356 CGCCTGGCGAATCATCATATTTTGTAT---AATGAGGTAATGTACGATTCTCAAACCCAT 378412 | || | |||| || | || | | ||||||| | || | ||| ||| |||| Sbjct 661838 CTTCTTCC--ATCAACACAATTCATCTTGAAATGAGGAAGAGTTCTATTGGTAAAGCCAT 661895 Query 378413 ATGGAATTCGTTTTCCATCAACATTCTGTTGACCAAGTGCAGAAACCATTTGAGCAATAT 378472 | |||||| || |||| ||||||| ||||| || | | |||||||||||| |||| Sbjct 661896 TTTGAATTCTTTGTCCAGCAACATTTTGTTGGCCTACACAGGCAACCATTTGAGCTATAT 661955 Query 378473 T 378473 | Sbjct 661956 T 661956 Score = 95.1 bits (104), Expect = 4e-14 Identities = 149/211 (71%), Gaps = 3/211 (1%) Strand=Plus/Plus Query 379245 AGCTTCTTCATCTTGAGGCATATGAAGATTCATTTCATCACCATCAAAATCAGCATTATA 379304 |||| ||||| ||||| | |||||||||||||||||| ||||| ||||| |||||||| Sbjct 662785 AGCTAGTTCATTCTGAGGAAGATGAAGATTCATTTCATCTCCATCGAAATCTGCATTATA 662844 Query 379305 TGGCTTAGTATCTCCTACATTCATTCTAAAAGTATCACCTTGATATAAAATTTTAACAAT 379364 || | | | | | |||| | ||||||||| || || || || || | ||| | Sbjct 662845 AGGAGCACAAGCACATTCATTGAATCTAAAAGT-TCTCCATGGCAT--AACTACAACTTT 662901 Query 379365 ATGACACATCATTGATAATCTATGAAGTGTAGGCTGACGATTAAATAAGACACCATCCCC 379424 ||| |||| || | |||||| | | || || | ||| |||||||| ||| || Sbjct 662902 GTGAGACATAATACTAAGTCTATGTAAACTTGGTTGTCTATTGAATAAGACGATATCTCC 662961 Query 379425 ATCCATCATATGTCTATGTACTTTATCTCCA 379455 | |||||||||| | ||| |||||||| Sbjct 662962 AGTTTTCATATGTCTTTCTACAATATCTCCA 662992 >seq7 Length=873514 Score = 183 bits (202), Expect = 9e-41 Identities = 179/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| | | ||| | || | ||| | |||||||||||||||||| || || || Sbjct 550083 CATACCACCTCTGAGTCTCAATACTAAATGTAAAGTAGACTCTTTTTGAATGTTGTAGTC 550024 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| | |||| ||||| || | ||||||||| |||||||||| |||||| |||||||| Sbjct 550023 AGAGAGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATTAAACGTTGTTGATCAGG 549964 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || ||||| || ||||| ||||| || || || ||||| ||||| | ||| || || || Sbjct 549963 TGGGATTCCCTCCTTATCTTGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGCTC 549904 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 |||||| | || | |||||||| || | || || |||||||||||||| Sbjct 549903 AACTTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCAT 549853 Score = 174 bits (192), Expect = 5e-38 Identities = 179/234 (76%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 140504 TTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATA 140563 |||||| || || | | ||| || || | || | ||| |||||||||||||| || || Sbjct 550314 TTACATTCCGCCTCTAAGTCTCAGGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTA 550255 Query 140564 ATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATC 140623 |||||| | |||| ||||| || | ||||||||| |||||||| | |||||| ||||| Sbjct 550254 ATCAGAGAGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATC 550195 Query 140624 AGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG 140683 ||| || |||||||| ||||| ||||| || || || ||||| ||||| | ||| || || Sbjct 550194 AGGTGGGATTCCTTCCTTATCTTGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGG 550135 Query 140684 TTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 |||||||| | || | |||||||| || | || || || ||||||||||| Sbjct 550134 CTCAACTTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACGAAAATCTGCAT 550081 >seq4 Length=1013555 Score = 152 bits (168), Expect = 2e-31 Identities = 238/337 (71%), Gaps = 10/337 (3%) Strand=Plus/Minus Query 349554 TTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTG 349613 |||| | |||||||| |||| ||| ||| | ||| | ||| | |||| |||||| Sbjct 702802 TTTTGGAAAAAATGAAAGAAACTGCCGAAACTTATCTTGGTAGAGGTGTAAAGCATGCTG 702743 Query 349614 TTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCA 349673 |||||||||| ||||| || ||||||||| | |||||| ||||| || ||||||||| Sbjct 702742 TTATTACTGTGCCAGCTTACTTTAATGATTCTCAGCGTCAAGCAACTAAGGATGCTGGCT 702683 Query 349674 GCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCAT 349733 || || || |||||||| |||||| |||||||| || || || || || |||||| Sbjct 702682 CTATAGCAGGCTTAAATGTAACAAGAATCATTAATGAGCCAACAGCAGCGGCTCTTGCAT 702623 Query 349734 ATGGGCTTGATAAAATGAG-TGACCAAGaaaaaaaTATTCTTA-TTTTTGATTTAGGTGG 349791 | || | || |||| || || | |||| | || | ||| |||||| || || Sbjct 702622 ACGGAATGGA-AAAAGCAGATGGC-------AAAACAATCGCAGTTTATGATTTGGGAGG 702571 Query 349792 TGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAAC 349851 |||||||| ||| | || | || || | ||| | ||||||||||||||||| Sbjct 702570 AGGTACTTTCGATATTTCTATTTTAGAGATTCTTGGCGGAGTGTTTGAAGTTAAAGCAAC 702511 Query 349852 TGCTGGTGATACACATCTTGGTGGAGAAGATTTTGAT 349888 | |||| | || || || |||||||| |||||| Sbjct 702510 TAATGGTAACACTTCCCTAGGAGGAGAAGACTTTGAT 702474 Score = 100 bits (110), Expect = 9e-16 Identities = 216/323 (67%), Gaps = 0/323 (0%) Strand=Plus/Minus Query 378126 TCCATCATCTCCATATGAGAATTGAACAATTTTATCTTTATTGTTTCTTACAGTCATATC 378185 |||||| |||||||| ||||||| ||| | | ||| | || || ||||| |||| Sbjct 504393 TCCATCTTCTCCATAAAGAAATTGAATAATGTCGCCATTACTATTCCTAACAGTTCTATC 504334 Query 378186 ATATCTAACCATTAAATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACCAGTTTG 378245 ||| ||||| ||||||| | ||| || || || | || ||||| || |||| Sbjct 504333 ATACTGTACCATACAATCTTCCATTGCCTTTATTAGCCTTCTTTGTATATACCCTGTTTC 504274 Query 378246 ACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAATAA 378305 ||||||| ||||||||||| | || | | || ||||| ||||| || || | Sbjct 504273 TGAAGTTTTACAAGCAGTATCAATGATTCCTTCTCTGCCTCCCATAGCATGAAAAAAAAC 504214 Query 378306 TTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTGGCGA 378365 ||| || ||||| || || | |||| || || ||| || | | ||| Sbjct 504213 TTCCTGGGGTGTAAGACCTGAAAGATATGAGTTCGAAACAAAACCACGACTTTCAGGCCC 504154 Query 378366 ATCATCATATTTTGTATAATGAGGTAATGTACGATTCTCAAACCCATATGGAATTCGTTT 378425 || ||||||||| | |||| || || | | || | ||||||| ||||||| ||||| Sbjct 504153 ATAATCATATTTCAAAAAATGTGGCAAGCTTCTATCCCTAAACCCAAATGGAATACGTTT 504094 Query 378426 TCCATCAACATTCTGTTGACCAA 378448 || || ||||| || || |||| Sbjct 504093 ACCTTCGACATTTTGCTGCCCAA 504071 >seq3 Length=1229751 Score = 123 bits (136), Expect = 8e-23 Identities = 181/254 (71%), Gaps = 4/254 (2%) Strand=Plus/Plus Query 396412 ATCTATACCTCGTCTACCTGCTCTACCAGCCATTTGTGTATATTCATGCGA--TAGTAAT 396469 ||| | ||||| ||| |||||||||||| |||||| || | || || || ||| Sbjct 469535 ATCAAGACCTCTTCTTCCTGCTCTACCACTCATTTGAATAAACTCTCCAGAGTTAACAAT 469594 Query 396470 TCTCTCATACCATTACCACTAAATTTACTAAGCTGAGTAAATATAACTGTTTTAGTAGGC 396529 ||| | | | || ||| |||||| ||||| |||||| ||||| ||||| | |||| Sbjct 469595 TCTGTACTCC--TTTCCATCAAATTTTCTAAGTGAAGTAAAGATAACCGTTTTTGCAGGC 469652 Query 396530 ATATTAATACCAACTGCAAAGGTTTCTGTTGCAAATAGTAATTTAATATAACGTTTTTCA 396589 || ||||| || | | ||| || ||||| | ||||||| ||||||| | | | || Sbjct 469653 ATGTTAATTCCCATAGAAAAAGTCTCTGTAGAGAATAGTACTTTAATAAATGACTCTCCA 469712 Query 396590 AATAGGAGTTCAACCATTTCTCGTAAAATAGGCATTATACCTGCATGATGAATTGCAATT 396649 || ||||| ||||| ||||| || || ||| | || |||| ||||||||||| | || Sbjct 469713 AAAAGGAGCTCAACTATTTCCTTTACAACAGGAAGTAAACCTCCATGATGAATTCCGATA 469772 Query 396650 CCtttttttAATAA 396663 || || | ||||| Sbjct 469773 CCCCTTCTCAATAA 469786 >seq6 Length=886497 Score = 100 bits (110), Expect = 9e-16 Identities = 84/103 (82%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 220648 TATCTAATAACGCAAAAGGACCATGTTTTAGAGCACCTGCTGAATATCCTTCTGCACGTA 220707 |||| | ||| |||||||| |||||||||||||| || |||||||| ||||| | | ||| Sbjct 834482 TATCAATTAATGCAAAAGGTCCATGTTTTAGAGCTCCAGCTGAATAACCTTCAGAATGTA 834541 Query 220708 TGTATGATATCTCTTTTATTTTTAGAGCACCTTCTTTTGCTAC 220750 | || ||||| || || ||||| ||||||||||| |||||| Sbjct 834542 TATAAGATATTTCCTTAATTTTGAGAGCACCTTCAAGTGCTAC 834584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515254050544454