Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001306235.1_202015-10- 01] 18 sequences; 9,112,937 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq7 147 5e-30 seq1 140 8e-28 >seq7 Length=873514 Score = 147 bits (162), Expect = 5e-30 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955 |||||| ||||| | ||| | ||||||||||||||| ||||| ||||| | || || || Sbjct 550299 AAGTCTCAGGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGAGAGAGTTCT 550240 Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 ||||| || | || || ||||| ||||| | |||||||| ||||| || | |||||| Sbjct 550239 ACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGGATTCCTTC 550180 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 ||| || || |||||| || || || || || || || || ||||| || | ||| Sbjct 550179 CTTATCTTGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGCTCAACTTCCAAAGT 550120 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| |||||||| || | |||||| || || | |||||| Sbjct 550119 GATAGTCTTTCCTGTCAAAGTCTTAACGAAAATCTGCAT 550081 Score = 123 bits (136), Expect = 6e-23 Identities = 148/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 210917 AGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCC 210976 ||| ||||||||||| ||||| || || | || || || ||||| || | || || || Sbjct 550050 AGTAGACTCTTTTTGAATGTTGTAGTCAGAGAGAGTTCTACCATCCTCTAATTGTTTTCC 549991 Query 210977 TGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTT 211036 ||| ||||| | |||||||| ||||| || | ||| ||||| || || |||||| || Sbjct 549990 TGCAAAGATTAAACGTTGTTGATCAGGTGGGATTCCCTCCTTATCTTGAATCTTTGCCTT 549931 Query 211037 CACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGT 211096 || || || || || || || ||||| || | |||||| |||||||| || | ||| Sbjct 549930 AACATTCTCAATTGTATCTGAAGGCTCAACTTCCAAAGTGATAGTCTTTCCTGTCAAAGT 549871 Query 211097 CTTTACAAACACCTGCATTTT 211117 ||| ||||| | |||||| || Sbjct 549870 CTTAACAAAAATCTGCATATT 549850 >seq1 Length=1296567 Score = 140 bits (154), Expect = 8e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955 |||||||| || | || | ||||||||| || ||||| || || || | || || || Sbjct 544474 AAGTCTTAATACTAAATGCAAAGTGGACTCCTTCTGGATATTGTAGTCAGATAGAGTTCT 544533 Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 |||||||||| ||||| || || ||||| || || ||||| |||||||||| || || Sbjct 544534 ACCATCTTCCAATTGCTTTCCAGCAAAGATCAGACGCTGTTGATCAGGAGGAATACCCTC 544593 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 ||| |||||||||||| || || || || || || || || |||||| || | || Sbjct 544594 CTTATCCTGGATCTTTGCCTTTACATTCTCAATAGTATCGGAAGGTTCAACTTCCAATGT 544653 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||| |||||||| || | ||| || ||||| | ||||| || Sbjct 544654 GATGGTCTTTCCTGTTAAAGTTTTGACAAAAATTTGCATCTT 544695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159151732670570