Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001306235.1_202015-10- 01] 18 sequences; 9,112,937 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq2 206 2e-48 >seq2 Length=1198512 Score = 206 bits (228), Expect = 2e-48 Identities = 575/860 (67%), Gaps = 29/860 (3%) Strand=Plus/Plus Query 4258 TTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTT 4317 |||| ||||| |||| |||||||||||| |||||||| |||| | |||||| | Sbjct 61645 TTTGATATTCACCAACTCTCTTTTCGAAGAAGTTAGTTTTACCTTGAAGTGAAATAAGGT 61704 Query 4318 CCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCA 4377 |||| ||||||| ||||||| ||||||| |||| | | | || | ||| | Sbjct 61705 CCATCCAATCAAAAGGATTAGAAACGTTGTAGATTTTTGGAATATCCAAGGCAAAAAGTA 61764 Query 4378 ATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGT-TCGCAGTTAATTCCAATTA-A 4435 ||| ||||| |||||||| ||||| ||| ||| ||| ||| | || || ||||| | | Sbjct 61765 ATCTATCAGCAACAAATTCAATATATTGGGCCATAAGTCTCGAA-TTCATACCAATAAGA 61823 Query 4436 TCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTAT 4495 || ||||| || | || | ||| | | ||| | || ||||||| || || Sbjct 61824 TCA-ACAGGAAGAGAGTCACAAAGAAAGTTTCTTTCAACTTCAACAGCTTCTGATATGAT 61882 Query 4496 ATCTTTTATTTTATCTTTAGATGGTTTATTTAC---TAAGTA-TCCAAACAATAAACACG 4551 | || || | || || |||| ||||| |||| | | | | |||||| | Sbjct 61883 TTGTTGTACTCTAGG---AGCTGGTA-ATTTAAATTTAAGGGCTTTATATATTAAACAAG 61938 Query 4552 CAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGG 4611 |||||||| ||| | |||||| || | ||||| ||||| |||||||| || | ||| | Sbjct 61939 CAAAATCAGCATGGAGACCTTCATCACGACTAATAAGTTCATTAGAAAATGTGAGTCCAG 61998 Query 4612 GCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGC 4671 |||| | || | |||||||||||||| || || ||| |||||||| | || | Sbjct 61999 GCATAAGTCCACGTTTTTTAAGCCAAAAAATTGCACAAAAGCTACCAGAAAATAGAATTC 62058 Query 4672 CTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCC 4731 |||| || || || | | | |||| | || || | ||| | || | ||| Sbjct 62059 CTTCAACAGCA-CAGAATCCAATAATTCTTTCAGCAAA-AGATCGCTCAGAATTCA-TCC 62115 Query 4732 ATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAAT-TGTGTATATAGCGTTAAAT 4790 |||| |||||| | ||||| || || || ||| || | | || || | ||| Sbjct 62116 ATTTAGTTGCCCATTCTGCTTTCTTTTTTACAGCTTCAATATGAGAA-ATTGCTTCAAAG 62174 Query 4791 A--ATTT-ACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATT 4847 | |||| || || || || | || |||||| | || || |||| ||| || Sbjct 62175 AGCATTTGACGTTCTTTAATT---TCAGTAATATATCTATCAATAAGTAATGAATAAGTT 62231 Query 4848 TCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACT 4907 ||| |||||| | ||| |||| || ||||| | ||| | ||||||||| | || | Sbjct 62232 TCACTATGTATTTGTTCAATAGACATTTGAAAAGCATAATACATTCTAGCTTCCGGTATT 62291 Query 4908 TGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCA 4967 || | ||| || || || || |||||||||| | || ||||| ||||| || ||| Sbjct 62292 TGTATTTCTCTAAGGAAATTTACTGCTAAGTTTTCCATAACAATACCATCACTTGCAGCA 62351 Query 4968 AAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCT---TAAGTTTTTTCCAG 5024 || || || ||||||| ||||| | | || ||||| | |||| ||| ||| Sbjct 62352 AAGAATGCTAAAACATATTTGATAAAATG-TCTT--TCAGGGTCTTTAAGACTTTCCCAA 62408 Query 5025 TGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTT 5084 | ||||| | ||| ||||| ||||||| | ||||||||||||||| |||||| Sbjct 62409 TCTCTAGTATCTTGACTTAGATCAATTTCTTCAGTAACCCAAAACGACGCTTCAGCTTTT 62468 Query 5085 TTGTACATAGACCAAATATC 5104 || ||||| ||||||||||| Sbjct 62469 TTATACATTGACCAAATATC 62488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427049506315994