Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001306245.1_202015-10- 01] 18 sequences; 9,221,024 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq7 149 9e-31 seq1 109 8e-19 >seq7 Length=872730 Score = 149 bits (164), Expect = 9e-31 Identities = 179/240 (75%), Gaps = 5/240 (2%) Strand=Plus/Plus Query 124533 AATACAA---TGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATT 124589 ||||||| |||| || ||| | ||||| | ||||| || ||||| ||| | || || Sbjct 577627 AATACAAATATGCAGATTTTTGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTT 577686 Query 124590 GAAGCAAATGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACC 124648 ||| | ||||||||| ||| |||| || || ||||||||||| ||||| || || Sbjct 577687 GAACCTTCAGATACAATTGAGAATGTTAAGGCA-AAGATTCAAGATAAGGAAGGAATCCC 577745 Query 124649 ACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGA 124708 ||||||||||||| | | || |||||||||||||||||||||||| || |||| | Sbjct 577746 ACCTGATCAACAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTC 577805 Query 124709 AGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || ||||||||||| || ||||| || || || | | | |||||||||| Sbjct 577806 TGATTACAACATTCAAAAAGAGTCCACTTTACACTTAGTCCTGAGACTTAGAGGTGGTAT 577865 Score = 140 bits (154), Expect = 5e-28 Identities = 171/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| | ||||| || ||||| ||| | || |||| | Sbjct 577864 ATGCAGATTTTCGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAGCCTTCA 577923 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| ||| |||| || || ||||||||||| || || || ||||||||||| Sbjct 577924 GATACAATTGAGAATGTTAAGGCA-AAGATTCAAGATAAGGAGGGAATCCCACCTGATCA 577982 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | | || |||||||||||||||||||||||| || |||| | || || || Sbjct 577983 ACAACGTTTAATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGACTACAA 578042 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||||||||| || ||||| ||||| || || | | |||||||||| Sbjct 578043 CATTCAAAAAGAGTCTACTTTACATTTAGTATTGAGACTCAGAGGTGGTAT 578093 Score = 132 bits (146), Expect = 7e-26 Identities = 148/195 (76%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 124554 AAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAAT 124613 ||||| | ||||| || ||||| ||| | || |||| | ||||||||| ||| Sbjct 578408 AAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAGCCTTCAGATACAATTGAGAAT 578467 Query 124614 -TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTT 124672 |||| || || ||||||||||| ||||| || ||||||||||||||| | | || || Sbjct 578468 GTTAAGGCA-AAGATTCAAGATAAGGAAGGAATCCCACCTGATCAACAACGTTTGATCTT 578526 Query 124673 TGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATC 124732 |||||||||||||||||||||| || |||| | ||||| || ||||||||||| || Sbjct 578527 TGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTACAACATTCAAAAAGAGTC 578586 Query 124733 AACTTTGCATTTGGT 124747 ||||| || || || Sbjct 578587 CACTTTACACTTAGT 578601 >seq1 Length=1295191 Score = 109 bits (120), Expect = 8e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || || ||||||| || || || || | || ||||| | Sbjct 550188 ATGCAAATTTTTGTCAAAACTTTAACAGGAAAGACCATCACATTGGAAGTTGAACCTTCC 550129 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| |||| || || || ||||| || ||||| || ||||||||| Sbjct 550128 GATACTATTGAGAATGTAAAGGCAAAGATCCAGGATAAGGAGGGTATTCCTCCTGATCAA 550069 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || || ||||| ||||| ||||| || ||| || |||| || || || ||| Sbjct 550068 CAGCGTCTGATCTTTGCTGGAAAGCAATTGGAAGATGGTAGAACTCTATCTGACTACAAT 550009 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTA 124751 || || || || || ||||||||||| || ||| Sbjct 550008 ATCCAGAAGGAGTCCACTTTGCATTTAGTATTA 549976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755455830022400