Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001306245.1_202015-10- 01] 18 sequences; 9,221,024 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq2 102 7e-17 seq1 96.9 3e-15 seq7 93.3 4e-14 >seq2 Length=1238148 Score = 102 bits (112), Expect = 7e-17 Identities = 370/572 (65%), Gaps = 13/572 (2%) Strand=Plus/Minus Query 57566 AGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGA 57625 ||| |||||| ||||| ||||| || ||||| ||||||||| |||||| | || Sbjct 87559 AGATATTTGGTCAATGTATAAAAAAGCTGAAGCGTCGTTTTGGGTTACTGAAGAAATTGA 87500 Query 57626 CCTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAA 57685 || | | ||| || |||||||| || ||||| |||| ||| ||||||| || Sbjct 87499 TCTAAGTCAAGATACTAGAGATTGGGAAAGTCTTAAAGACCCTGAAAGACATTTTATCAA 87440 Query 57686 ACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAG 57745 | | || || || || || || ||| ||||||||||||| || || || | | || Sbjct 87439 ATATGTTTTAGCATTCTTTGCTGCAAGTGATGGTATTGTTATGGAAAACTTAGCAGTAA- 87381 Query 57746 ATTTTCACA-AGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCA 57804 |||| | | |||| | ||| | |||| || ||| | ||| | |||||| || | | Sbjct 87380 ATTTCCTTAGAGAAATACAAATACCGGAAGCTAGAATGTATTATGCTTTTCAAATGTCTA 87321 Query 57805 TTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACG 57864 ||||| | | ||| |||| ||||| |||| || |||| || | | || || Sbjct 87320 TTGAACAAATACATAGTGAAACTTATTCATTACTTATTGATAGATATATTACTGA-AATT 87262 Query 57865 ACGAGAAACGT---AGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGG 57921 | | ||||| | || || | || || || || | ||||| | Sbjct 87261 A--AAGAACGTCAAATGCTCTTTGAAGCAATTTCTCATATTGAAGCTGTAAAAAAGAAAG 87204 Query 57922 CAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCA-CGTTCGCCGAGAGGCTAATC 57980 |||| ||| ||| |||||||| || | || | | || || || || | || Sbjct 87203 CAGAATGGGCAACTAAATGGATGAA----TTCTGAGCGATCTTTTGCTGAAAGAATTATT 87148 Query 57981 GCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATG 58040 | ||| || || ||||| || | ||||| || |||||| ||||| |||||| | Sbjct 87147 GGATTCTGTGCTGTTGAAGGAATTCTATTTTCTGGTAGCTTTTGTGCAATTTTTTGGCTT 87088 Query 58041 AAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAG 58100 || ||||| || || ||||| || || || ||| || || | || || || || Sbjct 87087 AAAAAACGTGGACTTATGCCTGGACTCACATTTTCTAATGAACTTATTAGTCGTGATGAA 87028 Query 58101 GGTCTCCATACTGATTTTGCGTGCCTAATGTA 58132 ||||||||| |||||||||| || |||| || Sbjct 87027 GGTCTCCATGCTGATTTTGCTTGTTTAATATA 86996 >seq1 Length=1295191 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||||||||| || || ||| | ||||| || || ||||| | || |||||||| Sbjct 550191 AAGATGCAAATTTTTGTCAAAACTTTAACAGGAAAGACCATCACATTGGAAGTTGAACCT 550132 Query 31250 TCCGACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||||| | | | || | || || || || || ||| ||||| || | || || || Sbjct 550131 TCCGATACTATTGAGAATGTAAAGGCAAAG-ATCCAGGATAAGGAGGGTATTCCTCCTGA 550073 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 || |||||||| || || ||||| || || |||||||| || ||| | || || Sbjct 550072 TCAACAGCGTCTGATCTTTGCTGGAAAGCAATTGGAAGATGGTAGAACTCTATCTGACTA 550013 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 || || || || || || ||| | ||| | ||| | ||||| || |||||| Sbjct 550012 CAATATCCAGAAGGAGTCCACTTTGCATTTAGTATTAAGACTTAGAGGCGGT 549961 >seq7 Length=872730 Score = 93.3 bits (102), Expect = 4e-14 Identities = 167/240 (70%), Gaps = 3/240 (1%) Strand=Plus/Plus Query 31184 GAAT-CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGT 31242 |||| |||| ||||| ||||| || |||||| ||||||| || || ||||| | || || Sbjct 577626 GAATACAAATATGCAGATTTTTGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGT 577685 Query 31243 TGAACCGTCCGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGC 31301 |||||| || || | | || | || || || ||| | | | |||||||| | | Sbjct 577686 TGAACCTTCAGATACAATTGAGAATGTTAAGGCAAAGATTCAAG-ATAAGGAAGGAATCC 577744 Query 31302 CGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGA 31361 | || || || || ||| | || || || || ||||| || || || || ||| | Sbjct 577745 CACCTGATCAACAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCT 577804 Query 31362 GCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| |||||||||||||| || ||| | || | || || ||||| || || |||| Sbjct 577805 CTGATTACAACATTCAAAAAGAGTCCACTTTACACTTAGTCCTGAGACTTAGAGGTGGTA 577864 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| |||||| ||||||| || || ||||| | || ||||| || || Sbjct 577864 ATGCAGATTTTCGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAGCCTTCA 577923 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | || | || || || ||| | | | ||||| || | || || || || Sbjct 577924 GATACAATTGAGAATGTTAAGGCAAAGATTCAAG-ATAAGGAGGGAATCCCACCTGATCA 577982 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 || ||| |||| || || || ||||| || || || || ||| | || || || Sbjct 577983 ACAACGTTTAATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGACTACAA 578042 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||||||||| || ||| | ||| | ||| | ||||| || || |||| Sbjct 578043 CATTCAAAAAGAGTCTACTTTACATTTAGTATTGAGACTCAGAGGTGGTA 578092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766299702560