Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001306245.1_202015-10- 01] 18 sequences; 9,221,024 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq2 298 7e-76 >seq2 Length=1238148 Score = 298 bits (330), Expect = 7e-76 Identities = 1194/1857 (64%), Gaps = 42/1857 (2%) Strand=Plus/Minus Query 64838 TGTGAATTGAATGGGAGCGGAT-GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTA 64896 ||| ||||| ||||| ||| | ||| || || | || ||| || || || ||||||| Sbjct 381741 TGTAAATTGTATGGG-GCGTGTCGCGCTTTGGGTCCTTAAATAATAAATGCCTGTTTTTA 381683 Query 64897 GACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTA 64956 |||| |||| || |||||||||||| | || || | | | | | || | | | Sbjct 381682 GACCTTTTTTCCAACCATAAAAATGCATAGATGATAACTTTGCAAAGTTAGCATTTTCCA 381623 Query 64957 TATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTA 65016 |||| || |||| |||||| |||| | | | ||||| ||||||||||| | | Sbjct 381622 TATGAATGTTCAAAGATTGCGATTGACAAACATATGGACCCCTATCTGCAGCCATATCAA 381563 Query 65017 TGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA-CTCGCTTAATATCTTCTGGA 65075 | | |||||||| ||||||||| | ||| ||||||| ||||| | |||||||| ||| Sbjct 381562 TTACTGTCTTTTGCTTAATTTCCCATACAGTCTTATAAAGCTCGCGT-ATATCTTCCGGA 381504 Query 65076 A-GGT--TTGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCA 65132 | || | |||| ||||| ||| || ||| ||||| | | ||| | | |||| Sbjct 381503 ATTGTAAGTATATTTTGAATACTGCCATTATTTGCAATAATATTCTGCTTAAGCCTATCA 381444 Query 65133 TTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCT 65192 | |||||| ||| |||| | | || | ||||||||| ||||| || || Sbjct 381443 TCCCATAACCCAAGCTCTAGTAAATCATTTAGCAAATGCGGATTTACTACAAAGAACTCA 381384 Query 65193 CCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTT 65252 ||||| | |||||| ||| ||||| || |||| | || || | | |||||| || Sbjct 381383 CCAGATAGTACTCTACGATGATAAATGTTCGAGGTAAATGGCTCAAAACTCTCATTGTTA 381324 Query 65253 CCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGA 65312 || |||||||| | ||| ||||| || ||||| || | | |||| | ||| | || | Sbjct 381323 CCTAAAATTTGCGAAGTGGATGCTGTTGGCATTGGAGATATTAATAGAGAATTACGAATA 381264 Query 65313 CCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGA---CGGTA 65367 || ||||| | || ||||||| || ||||||| ||||| | || ||| Sbjct 381263 CC--ATGTTTGGAAATCCTATCTTTAAGCAAATCCCAATCACAAAGTCCAGAGTCTGGTG 381206 Query 65368 CAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTAT 65427 ||| ||||| |||||| ||||| || ||| || |||||| | Sbjct 381205 TAACTCCCCACATATCAAATTGTAAAATACCCTTACTCGCAGGCGAACCGGAATATGTTT 381146 Query 65428 CGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGG 65487 ||||||| || | || || || || ||||| || || || | || | ||||| || Sbjct 381145 CGTATGGCCCGTATTTTTCTGCAAGCTCACAGCTAGCGTCGAGAGCTGCATAATAGATAA 381086 Query 65488 TTTCGAAGATCTTCTTATTTAGATCTTGTGCTTC--CAGGCTATCAAATGG-ATAATTTA 65544 ||| || || | ||||||| | | ||| | ||| | || | || ||| | Sbjct 381085 CTTCAAAAATTTGTTTATTTAACTTCTTAGCTCCCTCAGAC--TCGTACGGCATA--CGA 381030 Query 65545 AG-AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTA 65603 || | ||||| |||||| | ||||||| ||||| || | || | |||||| | Sbjct 381029 AGCATCATAAAACAGTCTGCGAGCCCTTGAATGCCAATCCCCAATGGACGATGTCTTAAA 380970 Query 65604 TTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTT 65663 || || ||| | ||| | || |||||| || || || | |||||| | ||| Sbjct 380969 TTCGATTTTTTACACTCTTTGAGAGAATAATATCCAACGTCAATCAATTTATTCAAATTC 380910 Query 65664 CTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCTCAT--CTATTA 65721 || ||| || || || || || | || ||||||||| || | | ||| Sbjct 380909 CTCGTAATCACCTTCGTAACTTCTTTTAACTTATCAAAATCAAACGTCTTGTTATTTTTA 380850 Query 65722 CAAAC--ATGTTCAATG--CAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCC 65777 ||| || || | | ||| ||| ||||||||||| ||||| || || | | Sbjct 380849 TCAACGAATTTTGGAAGGCCAATAGACGCCAGATTACAGACGGCAACTTCGTCCGTGCTA 380790 Query 65778 GCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGA 65837 | |||| ||| || || ||||| | ||||| | || ||||| ||||||| || Sbjct 380789 GTGTATTCTATGATTTCTGTGCATAAGTTACTTGAAACAATAGTTCCCAAATTTTTCTGG 380730 Query 65838 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGA 65897 ||||| || | || ||||| |||||| ||| ||||| || || || ||||| ||| Sbjct 380729 TTACTTTTGCTATTTGCAGCATCTTTATAACAAATAAATGGTGTCCCCGTCTCAATTTGA 380670 Query 65898 GATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATAGATTTGTATCTCTTTTC 65956 | | || || ||| | | || | || || || | || | | | Sbjct 380669 GCCTGTAAGATTAAGAACCA-AAGTTTCTGCGCTTTCATCGT--TTTCCTTCCACGGCCT 380613 Query 65957 TCTTTCGTATAGTGT--ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCA 66014 | |||| ||| | | ||| | | || || || |||||||||| | |||||| Sbjct 380612 TGTTTCTCATACTCTTCATATAGCTTCTTAAAATCATCGCCCCAAACATCTTGCAATCCC 380553 Query 66015 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC---ACTCGTTTCATA 66071 |||||||| || ||||| | | ||| ||| | ||||||| |||| || ||| Sbjct 380552 CTGCATTCATCTGGGCACATTAGAGTCCAATCT---TGATCCTTCTCAACTCTTTCCATG 380496 Query 66072 AAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCT 66131 || |||||||||| |||||| || ||| | ||| | ||| || || ||||| Sbjct 380495 AACAGATCAGGAACCCAAAGGGCAGGAAAGAGATCGCGACATCTCATCTCTTCCTTTCCG 380436 Query 66132 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATG 66191 |||||| | | || | ||| | | || |||| |||||||| ||||| || || Sbjct 380435 TGATTCTTCCTGATTTCAATAAACTCTACAACATCAACGTGCCACGGCTCCAAATAAATT 380376 Query 66192 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 66251 || || | || || || ||| || ||||| || || ||||| |||| ||||||| Sbjct 380375 GCAATGGCACCTTTACGCTTCCCTCCACCTTGATCAATATACCTAGCAGTGTCATTATAA 380316 Query 66252 ACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCA 66311 || | || ||| ||||| | ||||| ||| | ||||| || || ||||| ||| Sbjct 380315 ACGCGCAGCATCGGAATTAATCCATTAGATCTCCCATTTGTTCCTCGAATATATGAACCA 380256 Query 66312 CTTGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 66371 || | | ||||||||| | || | || | || || || | ||| || |||| Sbjct 380255 GTTCCTCTAATATTACTCACTGCCACCCCAAGACCACCCGCAGTCTTACTAATGTTTGCG 380196 Query 66372 CATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAA 66431 ||| ||| || ||| |||| || | ||| ||| || || | |||| |||| Sbjct 380195 CATTTAGTTAGTGTGTCAAAGATACCGTTTATTGAATCTTCTGGAATCCTGAGTAAAAAA 380136 Query 66432 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 66491 || |||||||| | || ||| || | |||||| | || || | || || ||| Sbjct 380135 CAAGATGACATTTGAGGTCGTGGAGTGCCTGAATTAAAGAGTGTGGGTGTTGCATGAGTA 380076 Query 66492 AACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGA 66551 || |||||| || | | | || || |||| || | || ||||| | |||| Sbjct 380075 AAATATTTTTGCGATAACAACTCATATGTTTCAAGTGCAGCTTCAATATCACCACAATGA 380016 Query 66552 ATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATT 66611 || || | ||| ||||| | | || || |||||||| || | ||||||| ||| Sbjct 380015 ATACCACAAGAGACCCGCATCAGAAGATGTTGTGGTCTTTCCACAACTTTGTTGTCAATT 379956 Query 66612 TTCAACAAG-TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 66667 || || ||| |||||| |||| | |||||| || ||||||| | |||| ||| || Sbjct 379955 TT-AAGAAGATAGGATCTTTCTAGAGTTTTGAAGGCAAAATAATCGTATTCAAAATC 379900 Score = 250 bits (276), Expect = 3e-61 Identities = 592/875 (68%), Gaps = 31/875 (4%) Strand=Plus/Plus Query 35842 GTCTTCTTGA--GAC-ATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAA 35898 ||| |||||| ||| |||||||| |||| |||||||| || | |||||||| || Sbjct 86686 GTCATCTTGATTGACCATAACTCCAGCCATTTGATATTCACCAACTCTCTTTTCGAAGAA 86745 Query 35899 ATTAGTTTTACCTTCTAATGATATATTTTCCATGAAATCGAATGGATTGATAACATTATA 35958 ||||||||||||| | ||| ||| ||||| |||| || ||||| ||| || || Sbjct 86746 GTTAGTTTTACCTTGAAGTGAAATAAGGTCCATCCAATCAAAAGGATTAGAAACGTTGTA 86805 Query 35959 AAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTT 36018 |||||| || |||| || ||| |||||||| || |||||||| |||||| Sbjct 86806 GATTTTTGGAATATCCAAGGCAAAAAGTAATCTATCAGCAACAAATTCAATATATTGGGC 86865 Query 36019 CATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTG 36078 ||| | | ||||||| || ||||| | ||| ||||||| || |||||| | | Sbjct 86866 CATAAGTCTCGAATTCATACCAATAAGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCT 86925 Query 36079 TTCAATAGAGACCGCGTCTGTTATAATAGATATTACTGTTTCTTCACTCGGTGG----AT 36134 ||||| || || |||| ||| || || || | || | | ||| | Sbjct 86926 TTCAACTTCAACAGCTTCTGATATGAT-----TTGTTG-TACTCTAGGAGCTGGTAATTT 86979 Query 36135 ACAATAAATG--TTTAAACATCAAACATGCGAAATC-GCAGTGTAGACCCTCGTCTCTAC 36191 | | | || | |||| | || ||||| || ||||| ||| || ||||| || || | || Sbjct 86980 AAATTTAAGGGCTTTATATATTAAACAAGCAAAATCAGCA-TGGAGACCTTCATCACGAC 87038 Query 36192 TAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATA 36251 |||| | ||| || ||||| |||||||| ||||| || ||||| |||||||||||||| | Sbjct 87039 TAATAAGTTCATTAGAAAATGTGAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAA 87098 Query 36252 TGGACGCAAATGAT-CCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTC 36310 | | | |||| | | |||||||| | ||||||||| || || || |||||| ||| Sbjct 87099 TTG-CACAAAAGCTACCAGAAAATAGAATTCCTTCAACAGCACAGAATCCAATAATTCTT 87157 Query 36311 TCTCCATAA-CCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTAC 36369 || || || || | | || ||||| || ||||| || || ||||||||||| Sbjct 87158 TCAGCAAAAGATCGCTCAG-AATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTTAC 87216 Query 36370 ACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATA 36429 | || || || | |||||| | ||| ||| | || ||| ||| Sbjct 87217 AGCTTCAATATGAGAAATTGCTTCAAAGAGCATTTGACGTTCTTTAATTTCAGTAATATA 87276 Query 36430 TGTATCAATCA--AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAAT 36487 | ||||||| | || || ||| |||| ||| || | |||||| | ||||||||| Sbjct 87277 TCTATCAATAAGTAATGA--ATAAGTTTCACTATGTATTTGTTCAATAGACATTTGAAAA 87334 Query 36488 CCGTAGAAACA-TCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATT 36546 | || | ||| |||||| || | || |||| |||| || || | ||||||| || Sbjct 87335 GCATA-ATACATTCTAGCTTCCGGTATTTGTATTTCTCTAAGGAAATTTACTGCTAAGTT 87393 Query 36547 TTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTT 36606 ||| | || || || ||||| || ||||| || || || |||| ||| ||||||| | | Sbjct 87394 TTCCATAACAATACCATCACTTGCAGCAAAGAATGCTAAAACATATTTGATAAAATGTCT 87453 Query 36607 TTCGTTTGGTGTT--AGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCC 36664 ||| ||| || || | | |||||| | |||||| | || ||| | |||||| Sbjct 87454 TTC--AGGGTCTTTAAGACTTTCCCAATCTCTAGTATCTTGACTTAGATCAATTTCTTCA 87511 Query 36665 ACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 36699 |||||| || || || || ||||||||||| Sbjct 87512 GTAACCCAAAACGACGCTTCAGCTTTTTTATACAT 87546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658172651911120