Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001306245.1_202015-10- 01] 18 sequences; 9,221,024 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2 298 7e-76 >seq2 Length=1238148 Score = 298 bits (330), Expect = 7e-76 Identities = 1183/1849 (64%), Gaps = 26/1849 (1%) Strand=Plus/Minus Query 70800 TGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAG 70859 |||||| || ||||| | ||| || || | || ||| || |||||||||||||| Sbjct 381741 TGTAAATTGTATGGGGCGTGTCGCGCTTTGGGTCCTTAAATAATAAATGCCTGTTTTTAG 381682 Query 70860 ACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTAT 70919 ||| |||| || |||||||||||| | || || | | || ||| || | || Sbjct 381681 ACCTTTTTTCCAACCATAAAAATGCATAGATGATAACTTTGCAAAGTTAGCATTTTCCAT 381622 Query 70920 GTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 70979 ||||| |||| || || |||| | | | ||||| ||||||||||| | || Sbjct 381621 ATGAATGTTCAAAGATTGCGATTGACAAACATATGGACCCCTATCTGCAGCCATATCAAT 381562 Query 70980 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA-CTCGCTTAATATCTTCTGGAA 71038 | |||||||| ||||||||| | ||| ||||||| ||||| | |||||||| |||| Sbjct 381561 TACTGTCTTTTGCTTAATTTCCCATACAGTCTTATAAAGCTCGCGT-ATATCTTCCGGAA 381503 Query 71039 -GGT--TTGTATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCAT 71095 || | |||| ||||| ||| || ||||||||| | | || | | |||| Sbjct 381502 TTGTAAGTATATTTTGAATACTGCCATTATTTGCAATAATATTCTGCTTAAGCCTATCAT 381443 Query 71096 TCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTC 71155 |||||| ||| |||| | | || | ||| ||||| ||||| || || | Sbjct 381442 CCCATAACCCAAGCTCTAGTAAATCATTTAGCAAATGCGGATTTACTACAAAGAACTCAC 381383 Query 71156 CAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTC 71215 |||| | |||||||||| ||||| || |||| | || || | |||||| || | Sbjct 381382 CAGATAGTACTCTACGATGATAAATGTTCGAGGTAAATGGCTCAAAACTCTCATTGTTAC 381323 Query 71216 CCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGAC 71275 | |||||||| | ||| ||||| || ||||| || | | |||||| ||| | || || Sbjct 381322 CTAAAATTTGCGAAGTGGATGCTGTTGGCATTGGAGATATTAATAGAGAATTACGAATAC 381263 Query 71276 CATGTGATCGG--ATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGA---TGGTAC 71330 ||||| | || || ||||||| || | ||||||| ||||| | || |||| Sbjct 381262 CATGT--TTGGAAATCCTATCTTTAAGCAAATCCCAATCACAAAGTCCAGAGTCTGGTGT 381205 Query 71331 AACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGATCCTGCATATGTATC 71390 ||| || || ||||| || || || | |||||| || Sbjct 381204 AACTCCCCACATATCAAATTGTAAAATACCCTTACTCGCAGGCGAACCGGAATATGTTTC 381145 Query 71391 GTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGT 71450 |||||| || | |||||| || || ||||| || || || | ||| ||||||| || Sbjct 381144 GTATGGCCCGTATTTTTCTGCAAGCTCACAGCTAGCGTCGAGAGCTGCATAATAGATAAC 381085 Query 71451 TTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGG-ATAATTTAAG- 71508 ||| ||||| | ||||| | | | ||| || || | || ||| ||| Sbjct 381084 TTCAAAAATTTGTTTATTTAACTTCTTAGCTCCCTCAGACTCGTACGGCATA--CGAAGC 381027 Query 71509 AGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTA 71568 | ||||| |||||| | ||||||| |||||| || | || | ||||| ||| Sbjct 381026 ATCATAAAACAGTCTGCGAGCCCTTGAATGCCAATCCCCAATGGACGATGTCTTAAATTC 380967 Query 71569 GAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG 71628 || ||| | ||| | || |||||| || || || | |||||| | ||| || Sbjct 380966 GATTTTTTACACTCTTTGAGAGAATAATATCCAACGTCAATCAATTTATTCAAATTCCTC 380907 Query 71629 ACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAA--TCTCCCATCTATTACAA 71686 || || || || || |||| || ||||||||| ||| | ||| | Sbjct 380906 GTAATCACCTTCGTAACTTCTTTTAACTTATCAAAATCAAACGTCTTGTTATTTTTATCA 380847 Query 71687 ACACGTT---CAAGG-CAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCA 71742 || || |||| ||| ||| ||||||||||| ||||| || || | | | Sbjct 380846 ACGAATTTTGGAAGGCCAATAGACGCCAGATTACAGACGGCAACTTCGTCCGTGCTAGTG 380787 Query 71743 TATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 71802 |||| ||| ||||| ||||| | ||||| | || ||||| ||||||| || ||| Sbjct 380786 TATTCTATGATTTCTGTGCATAAGTTACTTGAAACAATAGTTCCCAAATTTTTCTGGTTA 380727 Query 71803 CTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGAT 71862 || || | || ||||| |||||| |||||| || || || || ||||| |||| Sbjct 380726 CTTTTGCTATTTGCAGCATCTTTATAACAAATAAATGGTGTCCCCGTCTCAATTTGAGCC 380667 Query 71863 TCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATATTCTTGTATCTCTTTTCTCT 71921 | || || ||| | | || | || || || | ||| | | || | | Sbjct 380666 TGTAAGATTAAGAACCA-AAGTTTCTGCGCTTTCATCGTTTTCCTTCCACGGCCTTGTTT 380608 Query 71922 TTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACA 71981 || || | | ||||| | || || || |||||| ||| | ||||| || Sbjct 380607 CTCATACTCTTCATATAGCTTCTTAAAATCATCGCCCCAAACATCTTGCAATCCCCTGCA 380548 Query 71982 TTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATC 72041 ||||| || ||||| | | ||| ||| ||| | | |||| || ||| || ||||| Sbjct 380547 TTCATCTGGGCACATTAGAGTCCAATCTTGATCCTTCTCAACTCTTTCCATGAACAGATC 380488 Query 72042 AGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTT 72101 ||||| |||||| || ||| ||||| | ||| ||| || ||||| |||||| Sbjct 380487 AGGAACCCAAAGGGCAGGAAAGAGATCGCGACATCTCATCTCTTCCTTTCCGTGATTCTT 380428 Query 72102 TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAAC 72161 | | || | ||| | | || |||| |||||||| ||||| || || || || | Sbjct 380427 CCTGATTTCAATAAACTCTACAACATCAACGTGCCACGGCTCCAAATAAATTGCAATGGC 380368 Query 72162 TCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAA 72221 || || || ||| || ||||| || || ||||| |||| ||||||||| | || Sbjct 380367 ACCTTTACGCTTCCCTCCACCTTGATCAATATACCTAGCAGTGTCATTATAAACGCGCAG 380308 Query 72222 CATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACG 72281 ||| ||||| | ||||| ||| ||||| || || ||||| ||| | | | Sbjct 380307 CATCGGAATTAATCCATTAGATCTCCCATTTGTTCCTCGAATATATGAACCAGTTCCTCT 380248 Query 72282 AATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTT 72341 |||||| || | || | || | || || || | ||| || ||||||| | Sbjct 380247 AATATTACTCACTGCCACCCCAAGACCACCCGCAGTCTTACTAATGTTTGCGCATTTAGT 380188 Query 72342 TAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGA 72401 || || ||| |||| || | ||| ||| || || | |||| |||||| || Sbjct 380187 TAGTGTGTCAAAGATACCGTTTATTGAATCTTCTGGAATCCTGAGTAAAAAACAAGATGA 380128 Query 72402 CATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTT 72461 |||||| | || ||| || | |||||| | || || | || || ||||| |||| Sbjct 380127 CATTTGAGGTCGTGGAGTGCCTGAATTAAAGAGTGTGGGTGTTGCATGAGTAAAATATTT 380068 Query 72462 TTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTAC 72521 || || | | | || || |||| || | ||| ||||| | ||| || || Sbjct 380067 TTGCGATAACAACTCATATGTTTCAAGTGCAGCTTCAATATCACCACAATGAATACCACA 380008 Query 72522 CGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAA 72581 | ||| ||||| | | ||| || |||||||| || | ||||| | ||||| || || Sbjct 380007 AGAGACCCGCATCAGAAGATGTTGTGGTCTTTCCACAACTTTGTTGTCAATTTT-AAGAA 379949 Query 72582 G-TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 72629 | |||||| |||| | |||||| || ||||||| | |||| ||| || Sbjct 379948 GATAGGATCTTTCTAGAGTTTTGAAGGCAAAATAATCGTATTCAAAATC 379900 Score = 224 bits (248), Expect = 1e-53 Identities = 598/893 (67%), Gaps = 43/893 (5%) Strand=Plus/Plus Query 41749 GTCTTCTTGA--GAC-ATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAA 41805 ||| |||||| ||| |||||||| |||| |||||||| || | |||||||| || Sbjct 86686 GTCATCTTGATTGACCATAACTCCAGCCATTTGATATTCACCAACTCTCTTTTCGAAGAA 86745 Query 41806 ATTAGTCTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATA 41865 ||||| || |||| | ||| ||| ||||| ||||||| ||||| | ||| || || Sbjct 86746 GTTAGTTTTACCTTGAAGTGAAATAAGGTCCATCCAATCAAAAGGATTAGAAACGTTGTA 86805 Query 41866 AAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTT 41925 |||||| || |||| || ||| |||||||| || | ||||| |||||| Sbjct 86806 GATTTTTGGAATATCCAAGGCAAAAAGTAATCTATCAGCAACAAATTCAATATATTGGGC 86865 Query 41926 CATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTG 41985 ||| | | ||||||| || ||||| | ||| ||||||| || |||||| | | Sbjct 86866 CATAAGTCTCGAATTCATACCAATAAGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCT 86925 Query 41986 TTCAATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGA----T 42041 ||||| || || |||| ||| || | |||| | | | ||| | Sbjct 86926 TTCAACTTCAACAGCTTCTGATATGATTTGTTGTACTCT------AGGAGCTGGTAATTT 86979 Query 42042 ACAATAAATG--TTTAAACATCAAACATGCGAAATC-GCAGTGCAGACCCTCATCTCTAC 42098 | | | || | |||| | || ||||| || ||||| ||| || ||||| ||||| | || Sbjct 86980 AAATTTAAGGGCTTTATATATTAAACAAGCAAAATCAGCA-TGGAGACCTTCATCACGAC 87038 Query 42099 TAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATA 42158 |||| | ||| || ||||| |||||||| ||||| || ||||| |||||||||||||| | Sbjct 87039 TAATAAGTTCATTAGAAAATGTGAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAA 87098 Query 42159 TAGACGCAAATGAT-CCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTC 42217 | | | |||| | | |||||||| | |||||||| || || || |||||| ||| Sbjct 87099 TTG-CACAAAAGCTACCAGAAAATAGAATTCCTTCAACAGCACAGAATCCAATAATTCTT 87157 Query 42218 TCTCCATAA-CCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTAC 42276 || || || || | | || ||||| || ||||| || || ||||||||||| Sbjct 87158 TCAGCAAAAGATCGCTCAG-AATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTTAC 87216 Query 42277 ACAAGGCATCGTT----TCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAA 42332 | || || | || || | |||||| | ||| ||| | || ||| Sbjct 87217 A----GCTTCAATATGAGAAATTGCTTCAAAGAGCATTTGACGTTCTTTAATTTCAGTAA 87272 Query 42333 CATATGTATCGATCA--AAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTG 42390 |||| |||| || | || || ||| |||| ||| || | |||||| | ||| || Sbjct 87273 TATATCTATCAATAAGTAATGA--ATAAGTTTCACTATGTATTTGTTCAATAGACATTTG 87330 Query 42391 AAATCCGTAGAAACA-TCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTA 42449 ||| | || | ||| ||| || || | | |||| |||| || || | | |||| Sbjct 87331 AAAAGCATA-ATACATTCTAGCTTCCGGTATTTGTATTTCTCTAAGGAAATTTACTGCTA 87389 Query 42450 AATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAAT 42509 | ||||| | || || || ||||| || ||||| || || || |||| ||| ||||||| Sbjct 87390 AGTTTTCCATAACAATACCATCACTTGCAGCAAAGAATGCTAAAACATATTTGATAAAAT 87449 Query 42510 ATTTTTCGTCCGGTGTT--AATTTATTCCAATCATTGATATCTTTAGATATATCTACTTC 42567 | |||| ||| || | | | |||||| | |||||| | || ||| | ||| Sbjct 87450 GTCTTTC--AGGGTCTTTAAGACTTTCCCAATCTCTAGTATCTTGACTTAGATCAATTTC 87507 Query 42568 TTC--TACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATC 42618 ||| || | |||||| || ||||| || ||||||||||| ||| ||||| Sbjct 87508 TTCAGTAAC--CCAAAACGACGCTTCAGCTTTTTTATACATTGACCAAATATC 87558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671139048993680