Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001306245.1_202015-10- 01] 18 sequences; 9,221,024 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq7 159 3e-34 seq1 131 1e-25 >seq7 Length=872730 Score = 159 bits (176), Expect = 3e-34 Identities = 163/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| ||||| ||||||||||| ||||| || || || || ||||| | ||||| ||| | Sbjct 577632 AAATATGCAGATTTTTGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACC 577691 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | ||||| | || || | || ||| |||||||| ||||| || || ||||| || Sbjct 577692 TTCAGATACAATTGAGAATGTTAAGGCAAAGATTCAAGATAAGGAAGGAATCCCACCTGA 577751 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 |||||||||| | || ||||| || ||||| ||||||||| | || |||| ||||| Sbjct 577752 TCAACAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTA 577811 Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGT 22427 ||||||||||||||| ||||| |||| ||||| Sbjct 577812 CAACATTCAAAAAGAGTCCACTTTACACTTAGT 577844 Score = 150 bits (166), Expect = 2e-31 Identities = 163/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| ||||| ||||| || || || || ||||| | ||||| || | | Sbjct 577864 ATGCAGATTTTCGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAGCCTTCA 577923 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | || ||| |||||||| |||||||| || ||||| |||||| Sbjct 577924 GATACAATTGAGAATGTTAAGGCAAAGATTCAAGATAAGGAGGGAATCCCACCTGATCAA 577983 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||| || ||||| ||||||||| | || |||| || |||||| Sbjct 577984 CAACGTTTAATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGACTACAAC 578043 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGA 22434 ||||||||||| || || |||||||||| ||| || Sbjct 578044 ATTCAAAAAGAGTCTACTTTACATTTAGTATTGAGA 578079 Score = 134 bits (148), Expect = 1e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22231 GTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGAC 22290 ||||| ||||| || || || || ||||| | ||||| || | | ||||| | || Sbjct 578405 GTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAGCCTTCAGATACAATTGAG 578464 Query 22291 GATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATA 22350 || | || ||| |||||||| ||||| || || ||||| |||||||||||| | || Sbjct 578465 AATGTTAAGGCAAAGATTCAAGATAAGGAAGGAATCCCACCTGATCAACAACGTTTGATC 578524 Query 22351 TTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAA 22410 ||||| || ||||| ||||||||| | || |||| |||||||||||||||||||| Sbjct 578525 TTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTACAACATTCAAAAAGAG 578584 Query 22411 TCCACCATACATTTAGT 22427 ||||| |||| ||||| Sbjct 578585 TCCACTTTACACTTAGT 578601 >seq1 Length=1295191 Score = 131 bits (144), Expect = 1e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 ||||||||||||||||| ||||||||||| || || || |||| | ||||| ||| | Sbjct 550191 AAGATGCAAATTTTTGTCAAAACTTTAACAGGAAAGACCATCACATTGGAAGTTGAACCT 550132 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 ||||||| | || || | || ||| || || || |||||||||||||| || ||| Sbjct 550131 TCCGATACTATTGAGAATGTAAAGGCAAAGATCCAGGATAAGGAGGGTATTCCTCCTGAT 550072 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 ||||| ||||| || ||||| || || || || || ||| | || | || || ||| Sbjct 550071 CAACAGCGTCTGATCTTTGCTGGAAAGCAATTGGAAGATGGTAGAACTCTATCTGACTAC 550012 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTT 22430 || || || || || ||||| | |||||||| || Sbjct 550011 AATATCCAGAAGGAGTCCACTTTGCATTTAGTATT 549977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727907922170