Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001306245.1_202015-10- 01] 18 sequences; 9,221,024 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq2 143 3e-29 >seq2 Length=1238148 Score = 143 bits (158), Expect = 3e-29 Identities = 1111/1759 (63%), Gaps = 66/1759 (4%) Strand=Plus/Plus Query 111604 TGGAAACCCCACAGTACATGTTC--ATGCGGGTCGCGATCGGTATCCATGGGGAAGATAT 111661 |||||| ||||| |||| ||| ||||||||| | ||||| ||| | | ||||| Sbjct 379973 TGGAAAGACCACA--ACATCTTCTGATGCGGGTCTCTTGTGGTATTCATTGTGGTGATAT 380030 Query 111662 TGATTCTGTTTTGGAGACATACGACAAGATGTCCCGTGG-TATGTTCATCCACGCAACAC 111720 ||| ||| | || ||||| || | | || | ||| || || | ||||||| Sbjct 380031 TGAAGCTGCACTTGAAACATATGAGTTGTTATCGCAAAAATATTTTACTC-ATGCAACAC 380089 Query 111721 CAACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATT--GC 111778 | || ||||| || | || || ||| |||| |||||||| |||||| ||| | | Sbjct 380090 CCACACTCTTTAATTCAGGCACTCCACGACCTCAAATGTCATCTTGTTTT-TTACTCAGG 380148 Query 111779 AAACAAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTC 111838 | | || || ||||||| || || || | | ||| || ||| |||| || | || Sbjct 380149 ATTCCAGAAG-ATTCAATAAACGGTATCTTTGACACACTAACTAAATGCGCAAACATTAG 380207 Query 111839 AAAGTGGGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGT-CTCGTA 111897 ||| || |||||| | ||| || | | || | |||| ||| || | || Sbjct 380208 TAAGACTGCGGGTGGTCTTGGGGTGGCAGTGAGTAATATTAGAGG-AACTGGTTCATATA 380266 Query 111898 TTAGAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCA 111957 || |||| |||||||| ||| |||| | ||||| ||||| ||||| | ||| | || Sbjct 380267 TTCGAGGAACAAATGGGAGATCTAATGGATTAATTCCGATGCTGCGCGTTTATAATGACA 380326 Query 111958 CAGCGCGCTATGTAAACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTG 112014 | || | ||| | | |||| ||| | || || || | || ||| | ||| | | Sbjct 380327 CTGCTAGGTATATTGATCAAGGTGGAGGGAAGCGTAAAGGTGCCATTGCAATTTATTTGG 380386 Query 112015 AGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGG 112074 |||| ||||||| ||| | | ||||| |||| | | || || || | || | Sbjct 380387 AGCCGTGGCACGTTGATGTTGTAGAGTTTATTGAAATCAGGAAGAATCACGGAAAGGAAG 380446 Query 112075 AGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAG 112134 || | | || ||||||||||| | || || ||| |||| ||||| |||||| | |||| Sbjct 380447 AGATGAGATGTCGCGATCTCTTTCCTGCCCTTTGGGTTCCTGATCTGTTCATGGAAAGAG 380506 Query 112135 TTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGA-CAAGGCACCCGGTCTCTCCGAT 112193 ||||| || | ||||| |||| | || ||||| || ||| || | ||| Sbjct 380507 TTGAGAAGGATCAAGATTGGACTCTAATGTGCCCAGATGAATGCA-GGGGATTGCAAGAT 380565 Query 112194 GCCGTGGGTGAGGAGTTT--GAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGA 112251 | ||| || || ||| |||| || || | |||| ||| || || | || | | Sbjct 380566 GTTTGGGGCGATGATTTTAAGAAG--CTATATGAAGAGTATGAGAAACAAGGCCGTGGAA 380623 Query 112252 CTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCA-AGTCTCAAACCGAGACT 112310 ||| || ||| || || | | || ||| | || |||||| ||||| Sbjct 380624 GGAAAACGATGAAAGC-GCAGAAACTTTGGTTCTTAATCTTACAGGCTCAAATTGAGACG 380682 Query 112311 GGTACACCATATATGCTTTACAAAGACGCCTGTAACCA-AAAGAGTAATCAAAAGAATTT 112369 || ||||||| ||| ||| ||||| | ||| || | || ||||| || || ||||| Sbjct 380683 GGGACACCATTTATTTGTTATAAAGATG-CTGCAAATAGCAAAAGTAACCAGAAAAATTT 380741 Query 112370 GGGTGTGATCAAGAGTTCC----AACCTCTGTACAGAAATCTTGGAATTTACAGACAAAG 112425 || || | | ||| | ||| | || ||||||||| | |||| || || | Sbjct 380742 GG----GAACTATTGTTTCAAGTAACTTATGCACAGAAATCATAGAATACACTAGCACGG 380797 Query 112426 ATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGA 112485 | || || || ||||| || || || || | || || || | || ||| | | | Sbjct 380798 ACGAAGTTGCCGTCTGTAATCTGGCGTCTATTGGCCTTCCAAAATTCGTTGATAAAAATA 380857 Query 112486 CAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAA 112545 ||||| ||||||| ||| || | | ||||||||||| | || | || | | Sbjct 380858 ACAAGACGTTTGATTTTGATAAGTTAAAAGAAGTTACGAAGGTGATTACGAGGAATTTGA 380917 Query 112546 ACAGAGTTATTGA---TAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGA 112602 | | | | ||||| | || ||| || | | ||| || | ||||| ||| | | Sbjct 380918 ATAAATTGATTGACGTTGGATATTATT--CTCTCAAAGAGTG-TAAAAAATCGAATTTAA 380974 Query 112603 GACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGA-TGTAT--TCATTCTTTGTC 112659 |||| |||||| | || | || | ||||| ||||| || ||| | | || ||| || Sbjct 380975 GACATCGTCCATTGGGGATTGGCATTCAAGGGCTCGCAGACTGTTTTATGATGCTTCGTA 381034 Query 112660 GCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGT 112719 | | | || || || | ||| ||| | | ||| | || ||||| || | Sbjct 381035 TGC---CGTACGAGTCTGAGGGAGCTAAGAAGTTAAATAAACAAATTTTTGAAGTTATCT 381091 Query 112720 ATCACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCT 112779 || | || ||||| || || || | ||| | ||||| | || ||||| ||||| | Sbjct 381092 ATTATGCAGCTCTCGACGCTAGCTGTGAGCTTGCAGAAAAATACGGGCCATACGAAACAT 381151 Query 112780 TTGAGGGTTCTCCAGCTTCACAAGGGGTGCTT--CAATTTGATATGTGGGAAGGTGAGAC 112837 | ||||| || || | | |||| || |||||||||||||||| | || | || Sbjct 381152 ATTCCGGTTCGCCTGC--GAGTAAGGGTATTTTACAATTTGATATGTGGGGA-GTTACAC 381208 Query 112838 CAAGCT----TCACTACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTC 112893 || || | | || ||||| || || || | || | | ||| ||| Sbjct 381209 CAGACTCTGGACTTTGTGATTGGGATTTGCTTAAAGATAGGATTTCCAAACATGGTATTC 381268 Query 112894 GTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATA 112953 |||| ||| || || | |||||||||||||| ||||| | ||||| || ||||| | Sbjct 381269 GTAATTCTCTATTAATATCTCCAATGCCAACAGCATCCACTTCGCAAATTTTAGGTAACA 381328 Query 112954 ATGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGT 113013 |||| | ||||| || | || ||||||| |||| | ||| || | || |||| Sbjct 381329 ATGAGAGTTTTGAGCCATTTACCTCGAACATTTATCATCGTAGAGTACTATCTGGTGAGT 381388 Query 113014 TTGTGATTGTCAACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGG--TCCAA 113071 | | | || || |||| | | |||| | |||| |||| | ||| | | Sbjct 381389 TCTTTGTAGTAAATCCGCATTTGCTAAATGATTTACTAGAGCTTGGGTTATGGGATGATA 381448 Query 113072 GG-ATATGAAGGATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTC 113130 || || | || || | || | || || || ||||||||||| | |||| Sbjct 381449 GGCTTAAGCAGAATATTATTGCAAATAATGGCAGT---ATTCAAAATATACTTACAATTC 381505 Query 113131 CAGATGAAATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTG 113190 | || || || || | || || || |||||||| ||| ||| || |||| Sbjct 381506 CGGAAGATATACGCGAGCTTTATAAGACTGTATGGGAAATTAAGCAAAAGACAGTAATTG 381565 Query 113191 ACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTC--AT 113248 | ||||| |||||| | |||| | || |||| ||| | |||| |||| || Sbjct 381566 ATATGGCTGCAGATAGGGGTCCATATGTTTGTCAATCGCAATCTTTGAA--CATTCATAT 381623 Query 113249 GGAAAGT-CCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTC 113307 ||||| | | ||| || | ||| | || |||||||| | || ||||||| || |||| Sbjct 381624 GGAAAATGCTAACTTTG-CAAAGTTATCATCTATGCATTTTTATGGTTGGAAAAAAGGTC 381682 Query 113308 TCAAAACGGGGATGTATTA 113326 | ||||| || || ||||| Sbjct 381683 TAAAAACAGGCATTTATTA 381701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620742260332960