Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001306245.1_202015-10- 01] 18 sequences; 9,221,024 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq7 152 4e-32 seq1 152 4e-32 >seq7 Length=872730 Score = 152 bits (168), Expect = 4e-32 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 ||||| || | || || |||||||| || |||||||| | || |||||| |||| || Sbjct 577844 ACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGAGAGAGTTCTACCATCCTCT 577785 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 ||||| || |||||||| |||||||| |||||||| || || || ||||| ||||||||| Sbjct 577784 AATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGGATTCCTTCCTTATCTTGA 577725 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || ||| || ||| | || | || || || | ||| ||||| | ||||| || || Sbjct 577724 ATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGTTCAACTTCCAAAGTGATAGTCTTT 577665 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || ||||| || ||||| |||||||| Sbjct 577664 CCTGTCAAAGTCTTAACAAAAATCTGCAT 577636 Score = 140 bits (154), Expect = 3e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 || |||||||| | ||||| |||||||| || ||||| || | || |||||| |||| Sbjct 578075 AATACTAAATGTAAAGTAGACTCTTTTTGAATGTTGTAGTCAGAGAGAGTTCTACCATCC 578016 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 || ||||| || |||||||| || ||||| |||||||| || || || || || |||||| Sbjct 578015 TCTAATTGTTTTCCTGCAAAGATTAAACGTTGTTGATCAGGTGGGATTCCCTCCTTATCT 577956 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437 ||||| ||| || ||| | || | || || || | || ||||| | ||||| || Sbjct 577955 TGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGCTCAACTTCCAAAGTGATAGTC 577896 Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || ||||| || || || |||||||| Sbjct 577895 TTTCCTGTCAAAGTCTTAACGAAAATCTGCAT 577864 Score = 131 bits (144), Expect = 1e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 ||||| || | || || |||||||| || |||||||| | || |||||| |||| || Sbjct 578601 ACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGAGAGAGTTCTACCATCCTCT 578542 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 ||||| || |||||||| |||||||| |||||||| || || || ||||| ||||||||| Sbjct 578541 AATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGGATTCCTTCCTTATCTTGA 578482 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || ||| || ||| | || | || || || | || ||||| | ||||| || || Sbjct 578481 ATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGCTCAACTTCCAAAGTGATAGTCTTT 578422 Query 101441 CCGGTTAAAGTTTTTAC 101457 || || ||||| || || Sbjct 578421 CCTGTCAAAGTCTTAAC 578405 >seq1 Length=1295191 Score = 152 bits (168), Expect = 4e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||| | | ||| |||||||| | || || || || || |||||||| || | Sbjct 549962 CCGCCTCTAAGTCTTAATACTAAATGCAAAGTGGACTCCTTCTGGATATTGTAGTCAGAT 550021 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||||| |||| ||||||||||| || ||||| |||| |||||||||||| || ||| Sbjct 550022 AGAGTTCTACCATCTTCCAATTGCTTTCCAGCAAAGATCAGACGCTGTTGATCAGGAGGA 550081 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || || ||||| || || ||| |||||| | || | ||| || || | ||| ||| Sbjct 550082 ATACCCTCCTTATCCTGGATCTTTGCCTTTACATTCTCAATAGTATCGGAAGGTTCAACT 550141 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | |||| || || || ||||||||||| ||||| || ||||| Sbjct 550142 TCCAATGTGATGGTCTTTCCTGTTAAAGTTTTGACAAAAATTTGCAT 550188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396278313066426