Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001306245.1_202015-10- 01] 18 sequences; 9,221,024 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq1 132 4e-26 seq7 113 3e-20 >seq1 Length=1295191 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| || || | || || ||||| | ||| ||| || || |||||||| |||||| Sbjct 549962 CCGCCTCTAAGTCTTAATACTAAATGCAAAGTGGACTCCTTCTGGATATTGTAGTCAGAT 550021 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| ||| | | || ||||| ||||| || ||||| ||||| ||||||||||| | ||| Sbjct 550022 AGAGTTCTACCATCTTCCAATTGCTTTCCAGCAAAGATCAGACGCTGTTGATCAGGAGGA 550081 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||| || |||||| |||||| | | || || || | || || Sbjct 550082 ATACCCTCCTTATCCTGGATCTTTGCCTTTACATTCTCAATAGTATCGGAAGGTTCAACT 550141 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 |||| || || || ||||| || |||||||| |||||||| |||||| Sbjct 550142 TCCAATGTGATGGTCTTTCCTGTTAAAGTTTTGACAAAAATTTGCATC 550189 >seq7 Length=872730 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || | || || || |||| ||| |||||||||||| ||||||||||| Sbjct 577862 CCACCTCTAAGTCTCAGGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGAG 577803 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| ||| | | || || || || || || ||||| |||| || |||||||| | || Sbjct 577802 AGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGG 577743 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || ||||| || ||||||| || ||| | | | ||||| | || || Sbjct 577742 ATTCCTTCCTTATCTTGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGTTCAACT 577683 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || || ||||| |||||||| || |||||||||||||| Sbjct 577682 TCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCAT 577636 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || | ||| || ||||||| || |||||||||||| ||||| ||||| Sbjct 578090 CCACCTCTGAGTCTCAATACTAAATGTAAAGTAGACTCTTTTTGAATGTTGTAGTCAGAG 578031 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| ||| | | || || || || || || ||||| || | || |||||||| | || Sbjct 578030 AGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATTAAACGTTGTTGATCAGGTGGG 577971 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||| || ||||||| || ||| | | | ||||| | ||| || Sbjct 577970 ATTCCCTCCTTATCTTGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGCTCAACT 577911 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || || ||||| |||||||| || || ||||||||||| Sbjct 577910 TCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACGAAAATCTGCAT 577864 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| || || | || || || |||| ||| |||||||||||| ||||||||||| Sbjct 578619 CCGCCTCTAAGTCTCAGGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGAG 578560 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| ||| | | || || || || || || ||||| |||| || |||||||| | || Sbjct 578559 AGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGG 578500 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || ||||| || ||||||| || ||| | | | ||||| | ||| || Sbjct 578499 ATTCCTTCCTTATCTTGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGCTCAACT 578440 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 |||| || || || ||||| |||||||| || || Sbjct 578439 TCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAAC 578405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380937516431814