Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001306245.1_202015-10- 01] 18 sequences; 9,221,024 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq6 161 3e-34 seq2 127 6e-24 >seq6 Length=863389 Score = 161 bits (178), Expect = 3e-34 Identities = 355/521 (68%), Gaps = 17/521 (3%) Strand=Plus/Plus Query 288848 TCCTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTG 288907 |||||||||| || || | ||| |||||||| || ||||||| ||| | | |||||| Sbjct 729944 TCCTATCAAATCTTCCTGGACGTGTTAATGCGGGATCTAATACATCAGAACGATTTGTTC 730003 Query 288908 CTGCCAATACAACAA-TAGATTCGGTTTGCTTAAATCCATCCATACTTGTTAAAATTTGA 288966 |||| || || | | | ||| ||| ||||||||||||| | | ||| ||| Sbjct 730004 CTGCTAAAACTATTACTCCATTAT-TTTCAGTAAATCCATCCATTTCTACAAGAATCTGA 730062 Query 288967 TTAAGTGTTTGTTCCCTTTCATCATT---TGAACCTCTTGAATCACCCGAATC-GCTCCt 289022 ||||| || ||| || |||||||| |||| | | ||||| | || | Sbjct 730063 TTAAGAGTGCTTTCTCTCTCATCATTAGATGAAGCAGCAAATCCACCCCCTTTTGCACGC 730122 Query 289023 ttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGC 289082 ||| || ||||| ||||||||||| ||||| |||| | || ||||| || ||| || Sbjct 730123 TTTCTT-CCAACTGCATCAATTTCATCAATAAAAACAATACTTGGAGATAATTTTCTTGC 730181 Query 289083 AATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTC 289142 || ||||||||||||||| | ||| || | |||||| | || || | ||| || Sbjct 730182 CTGTGAAAATAATTCTCTTACTCTACTTGCACCCATTCCAACAAAAATCTCAATAAAATC 730241 Query 289143 AGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAG 289202 | | |||| | || |||| |||||| ||||| || || || || | |||| | Sbjct 730242 ACTTCCAGATATATAAAAAAATGGTACATTAGCTTCACCAGCAACAGCTTTTGCCAATAA 730301 Query 289203 TGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGC 289262 ||| ||||| || || |||||||| | |||| | | || ||||||| |||||| ||| Sbjct 730302 TGTTTTACCGGTACCTGGTGGTCCTACCAATAAAGCACCTTTTGGTATTTTTGCACCA-- 730359 Query 289263 AGA-CTT---ATATTTCTCAGGGCTC-TTTAAAAATTCTACAATTTCCTCAAGTTCATAT 289317 ||| ||| || ||| | || || ||||| |||||||| | ||| | | ||| | | Sbjct 730360 AGATCTTGAAATCTTTTT---GGATCTTTTAAGAATTCTACCAATTCATATATTTCTTGT 730416 Query 289318 TTTGCCTCATCACATCCTGCTACATCAGCAAAAGTAATATT 289358 || || || | ||| || | |||| ||| ||||||| Sbjct 730417 TTGGCTTCTTTCATTCCAGCAATATCACTAAATTTAATATT 730457 >seq2 Length=1238148 Score = 127 bits (140), Expect = 6e-24 Identities = 286/423 (68%), Gaps = 14/423 (3%) Strand=Plus/Minus Query 154538 ATAATAAATACCTGTCTTTAGCCCTGCCCGCCAACCATAGAAATGCATATTTGTTAATGA 154597 ||||||||| ||||| ||||| ||| ||||||||| ||||||||| || ||| Sbjct 381702 ATAATAAATGCCTGTTTTTAGACCTTTTTTCCAACCATAAAAATGCATAGATGATAACTT 381643 Query 154598 TTTAGGCTCTGGGTCTTCCATCCATAAAT--TCATACTCTGCGATTGGCAAATATATAAT 154655 | | | | | |||||| || ||| ||| | |||||||| |||| |||| Sbjct 381642 TGCAAAGTTAGCATTTTCCAT--ATGAATGTTCAAAGATTGCGATTGACAAACATATGGA 381585 Query 154656 CCGCGGTCACGAGCCATATCAATTAGTGTCTTCATTTTAATTTCCCATACAATCTTGTAT 154715 || | || |||||||||||||| |||||| ||||||||||||||| |||| || Sbjct 381584 CCCCTATCTGCAGCCATATCAATTACTGTCTTTTGCTTAATTTCCCATACAGTCTTATAA 381525 Query 154716 TTCTCTTTAATATGTTCTGGTAGTCCATCAATATATTGAACGCTTCCCTTGTTGGCAATA 154775 ||| |||| ||| || | | | |||| ||||| || || || || |||||| Sbjct 381524 AGCTCGCGTATATCTTCCGGAATTGTAAGTATATTTTGAATACTGCCATTATTTGCAATA 381465 Query 154776 ATATTGTTCTTGACGCTTTCATCCCATAGTTTTAGTGCCAGTAGTTCATCGACCAGAT-- 154833 ||||| | ||| | || |||||||||| || | |||| |||| | || || Sbjct 381464 ATATTCTGCTTAAGCCTATCATCCCATAACCCAAGCTCTAGTAAATCATTTAGCAAATGC 381405 Query 154834 --ATTTATTAACCATCGTAAATTCACCCGCCAGAGTTTTCCTGCTG-TAAATATTACTTG 154890 ||||| || || | || ||||| | || | | | | || ||||| || | Sbjct 381404 GGATTTACTA--CAAAG--AACTCACCAGATAGTACTCTAC-GATGATAAATGTTCGAGG 381350 Query 154891 TAATTGGCTCAAAGCACTCGTTATTACCTAAAATCTGGCTTGTGCTTGCTGTAGGCATGG 154950 ||| ||||||||| | ||| || ||||||||||| || ||| |||||| ||||| | Sbjct 381349 TAAATGGCTCAAAACTCTCATTGTTACCTAAAATTTGCGAAGTGGATGCTGTTGGCATTG 381290 Query 154951 GAG 154953 ||| Sbjct 381289 GAG 381287 Score = 113 bits (124), Expect = 1e-19 Identities = 344/529 (65%), Gaps = 7/529 (1%) Strand=Plus/Minus Query 155979 CCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATAC 156038 ||||||||||||| | || | || || ||| |||| || ||||||| ||| Sbjct 380438 CCGTGATTCTTCCTGATTTCAATAAACTCTACAACATCAACGTGCCACGGCTCCAAATAA 380379 Query 156039 ATAGCAAAACTACCATTCCTCTTGCC---ACCCTGATCTACATACCGAGCAGTCTTATTG 156095 || |||| ||| || | ||| || ||| ||||| | ||||| |||||| | ||| Sbjct 380378 ATTGCAATGGCACCTTTACGCTTCCCTCCACCTTGATCAATATACCTAGCAGTGTCATTA 380319 Query 156096 AAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAA 156155 | || | ||||| ||||| | ||||| || | ||||| ||||| ||||||| ||| Sbjct 380318 TAAACGCGCAGCATCGGAATTAATCCATTAGATCTCCCATTTGTTCCTCGAATATATGAA 380259 Query 156156 CCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGA 156215 |||| | | || |||| | | |||| |||||| | ||| ||| | Sbjct 380258 CCAGTTCCTCTAATATTACTCACTGCCACCCCAAGACCACCCGCAGTCTTACTAATGTTT 380199 Query 156216 GCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGA 156275 ||||||| ||| || | || ||||| | || ||||| ||| || |||| | Sbjct 380198 GCGCATTTAGTTAGTGTGTCAAAGATACCGTTTATTGAATCTTCTGGAATCCTGAGTAAA 380139 Query 156276 TAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGA 156335 | || || | |||||||||||| || || | || || ||||| |||||||||||| Sbjct 380138 AAACAAGATGACATTTGAGGTCGTGGAGTGCCTGAATTAAAGAGTGTGGGTGTTGCATGA 380079 Query 156336 ATAAAATACTTATTAGACATATAATCGTATGTCTC--CTTAATCTTCTCAAGATTAGACC 156393 ||||||| || | || | | || ||||| || | | || |||| || | | Sbjct 380078 GTAAAATATTTTTGCGATAACAACTCATATGTTTCAAGTGCAGCT--TCAATATCACCAC 380021 Query 156394 CGTGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCAT 156453 ||||||| |||||||| |||| | ||| || || | || |||| | Sbjct 380020 AATGAATACCACAAGAGACCCGCATCAGAAGATGTTGTGGTCTTTCCACAACTTTGTTGT 379961 Query 156454 CAATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATAATC 156502 ||||| ||||| || | | ||| |||||||| || | |||||||| Sbjct 379960 CAATTTTAAGAAGATAGGATCTTTCTAGAGTTTTGAAGGCAAAATAATC 379912 Score = 89.7 bits (98), Expect = 2e-12 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 448899 GAAATCAAGAAGGCATATAAACGACTCGCAATTAAACATCATCCTGATAAAAATCCAGAT 448958 ||||| |||||| |||||| | | | ||| | ||| |||||||||||||| || ||| Sbjct 547839 GAAATAAAGAAGTCATATAGAAAATTAGCATTAAAATGGCATCCTGATAAAAACCCTGAT 547780 Query 448959 AATAAAGCAGAGGCAGAGGAGAAATTCAAAGAGATTTCTCAAGCTTATGAAATT 449012 |||| || ||| || ||||||| |||||| ||||| | ||||||| ||| || Sbjct 547779 AATAGAGAAGAAGCTGAGGAGATGTTCAAAAAGATTGCAGAAGCTTACGAAGTT 547726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471817260562066