Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001306245.1_202015-10- 01] 18 sequences; 9,221,024 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq7 118 8e-22 seq1 89.7 4e-13 >seq7 Length=872730 Score = 118 bits (130), Expect = 8e-22 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 ||| || || || | ||||| |||||||||||||| ||||| | | || | | ||| Sbjct 577848 CAGGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGAGAGAGTTCTACCATC 577789 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || | |||||| || ||| | ||||| | ||| ||||| || || || || || || || Sbjct 577788 CTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGGATTCCTTCCTTATC 577729 Query 29694 TTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAG 29752 ||| ||| |||| || ||| | || | || || ||| |||| ||||| | ||| |||| Sbjct 577728 TTG-AATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGTTCAACTTCCAAAGTGATAG 577670 Query 29753 TTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 | || || || || || |||||||| |||||||| || Sbjct 577669 TCTTTCCTGTCAAAGTCTTAACAAAAATCTGCATATT 577633 Score = 102 bits (112), Expect = 6e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 || ||||| | || || |||||||||||||| || || | | || | | ||| || Sbjct 578072 ACTAAATGTAAAGTAGACTCTTTTTGAATGTTGTAGTCAGAGAGAGTTCTACCATCCTCT 578013 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 | |||||| || ||| | || || | ||| ||||| || || || ||||| || ||||| Sbjct 578012 AATTGTTTTCCTGCAAAGATTAAACGTTGTTGATCAGGTGGGATTCCCTCCTTATCTTG- 577954 Query 29698 AATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756 ||| |||| || ||| | || | || || ||| | || ||||| | ||| ||||| || Sbjct 577953 AATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGCTCAACTTCCAAAGTGATAGTCTT 577894 Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || ||||| || |||||||| Sbjct 577893 TCCTGTCAAAGTCTTAACGAAAATCTGCAT 577864 Score = 96.9 bits (106), Expect = 3e-15 Identities = 144/202 (71%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 ||| || || || | ||||| |||||||||||||| ||||| | | || | | ||| Sbjct 578605 CAGGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGAGAGAGTTCTACCATC 578546 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || | |||||| || ||| | ||||| | ||| ||||| || || || || || || || Sbjct 578545 CTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGGATTCCTTCCTTATC 578486 Query 29694 TTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAG 29752 ||| ||| |||| || ||| | || | || || ||| | || ||||| | ||| |||| Sbjct 578485 TTG-AATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGCTCAACTTCCAAAGTGATAG 578427 Query 29753 TTTTGCCAGTTAAGGTTTTAAC 29774 | || || || || || ||||| Sbjct 578426 TCTTTCCTGTCAAAGTCTTAAC 578405 >seq1 Length=1295191 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 || ||||| | ||||| || || || || || || || | | || | | ||| || Sbjct 549980 ACTAAATGCAAAGTGGACTCCTTCTGGATATTGTAGTCAGATAGAGTTCTACCATCTTCC 550039 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 | ||| || |||||| | |||| | || ||||| || ||||||||||| || || || Sbjct 550040 AATTGCTTTCCAGCAAAGATCAGACGCTGTTGATCAGGAGGAATACCCTCCTTATCCTGG 550099 Query 29698 AATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTG 29757 | ||| || ||| | || | ||| || ||| |||| ||||| | || || || || Sbjct 550100 ATCTTTGCCTTTACATTCTCAATAGTATCGGAAGGTTCAACTTCCAATGTGATGGTCTTT 550159 Query 29758 CCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || ||||| ||||| ||||| || ||||| || Sbjct 550160 CCTGTTAAAGTTTTGACAAAAATTTGCATCTT 550191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385219115492538