Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001306245.1_202015-10- 01] 18 sequences; 9,221,024 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq9 95.1 2e-14 >seq9 Length=379940 Score = 95.1 bits (104), Expect = 2e-14 Identities = 257/388 (66%), Gaps = 24/388 (6%) Strand=Plus/Plus Query 162999 TTAAGGTTGCTCAATTAAGTGGGTATGTTGCGGAACAAACAGACTATAAACACGGTGAA- 163057 |||| ||||| |||||| ||| |||||||| ||||| | | ||| | || || ||| Sbjct 191564 TTAAAGTTGCACAATTAGCTGGTTATGTTGCTGAACATAGTGCTTATCATCATGGAGAAT 191623 Query 163058 CAAAATTT--ATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATA 163115 || ||| | || ||||| |||| | || ||| |||||||||| | |||||| Sbjct 191624 CATCATTGCAAAGT---ACTATTGTTAATATGGCTCAAAATTTTGTTGGAAGTAATAATC 191680 Query 163116 TAGCATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTC-- 163173 || || | ||||| |||||||||||||| ||| |||||| || |||||| | Sbjct 191681 TAAATCTATTAGAACCATGTGGTCAATTTGGTAGTAGAAAAGAAGGTGGAAAAGATGCAA 191740 Query 163174 -TGCGGCATCAAGATATATTTATACCAAACCAAATAAAATATTAAAATATATATTTAGAG 163232 ||| || || | ||||| | ||| || | | |||| | |||||| || || Sbjct 191741 GTGCTGC-TC--GTTATATATTTACTAAGCTATCTAAATGGACTAGATATATTTTCCCAG 191797 Query 163233 AAGAAGATGACCCTATTTTAAATTAT---ACTGTTGAGGG---------TGAACCTGTTC 163280 | | ||||| ||| | |||| |||| || ||| || ||||||| | Sbjct 191798 AGGCTGATGATCCTTTATTAACTTATTTATATGATGATGGACAACAAATTGAACCTTTAT 191857 Query 163281 ATTTTATCCCAGTGATTCCATTAATTTTAATTAATGGTTCTATTGGTATTGGAACAGGAT 163340 ||| | ||| | |||||| | ||||| | |||||| || ||| ||||| ||||| | Sbjct 191858 ATTACGTTCCAATAATTCCAATGATTTTGGTAAATGGTACTGATGGAATTGGTACAGGTT 191917 Query 163341 GGTCATGTTTTATCCCTCAATATAATCC 163368 || ||| | ||| | |||||||| Sbjct 191918 GGAGTAGTTCAGTTCCTAACTATAATCC 191945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635177457085040