Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001306245.1_202015-10- 01] 18 sequences; 9,221,024 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq7 116 9e-21 seq1 107 5e-18 >seq7 Length=872730 Score = 116 bits (128), Expect = 9e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | |||||||| || |||||||||||||| ||| ||| || Sbjct 577639 CAGATTTTTGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCAGAT 577698 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | || || ||| |||||||||||| || |||||||| || || ||| Sbjct 577699 ACAATTGAGAATGTTAAGGCAAAGATTCAAGATAAGGAAGGAATCCCACCTGATCAACAA 577758 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||| || ||||| || || || ||||| || ||| | | ||||||||| | Sbjct 577759 CGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTACAACATT 577818 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 || |||||||| ||| | ||| | || |||||||| || Sbjct 577819 CAAAAAGAGTCCACTTTACACTTAGTCCTGAGACTTAGA 577857 Score = 109 bits (120), Expect = 1e-18 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 |||||||| || |||||||||||||| || ||| || ||| | || || ||| | Sbjct 578417 ACAGGAAAGACTATCACTTTGGAAGTTGAGCCTTCAGATACAATTGAGAATGTTAAGGCA 578476 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||||||||| || |||||||| || || ||| | | ||||| || ||||| Sbjct 578477 AAGATTCAAGATAAGGAAGGAATCCCACCTGATCAACAACGTTTGATCTTTGCAGGAAAA 578536 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || || || ||||| || ||| | | ||||||||| | || |||||||| ||| | ||| Sbjct 578537 CAATTAGAGGATGGTAGAACTCTCTCTGATTACAACATTCAAAAAGAGTCCACTTTACAC 578596 Query 206374 CTTGTTTTGAGACTTCGA 206391 | || |||||||| || Sbjct 578597 TTAGTCCTGAGACTTAGA 578614 Score = 102 bits (112), Expect = 2e-16 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 |||||||| || |||||||||||||| || ||| || ||| | || || ||| | Sbjct 577888 ACAGGAAAGACTATCACTTTGGAAGTTGAGCCTTCAGATACAATTGAGAATGTTAAGGCA 577947 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||||||||| || || ||||| || || ||| | | ||||| || ||||| Sbjct 577948 AAGATTCAAGATAAGGAGGGAATCCCACCTGATCAACAACGTTTAATCTTTGCAGGAAAA 578007 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || || || ||||| || ||| | | || |||||| | || |||||||||||| | || Sbjct 578008 CAATTAGAGGATGGTAGAACTCTCTCTGACTACAACATTCAAAAAGAGTCTACTTTACAT 578067 Query 206374 CTTGTTTTGAGACT 206387 | || |||||||| Sbjct 578068 TTAGTATTGAGACT 578081 >seq1 Length=1295191 Score = 107 bits (118), Expect = 5e-18 Identities = 153/214 (71%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| |||||| | |||||||| || ||||| |||||||| ||| ||| || || | Sbjct 550180 TTTTGTCAAAACTTTAACAGGAAAGACCATCACATTGGAAGTTGAACCTTCCGATACTAT 550121 Query 206238 CGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297 || |||||| |||||| || || || || || ||| || || || | || Sbjct 550120 TGAGAATGTAAAGGCAAAGATCCAGGATAAGGAGGGTATTCCTCCTGATCAACAGCGTCT 550061 Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357 ||||| || |||||||| ||||||||||| || ||| | | || ||||| ||||||| Sbjct 550060 GATCTTTGCTGGAAAGCAATTGGAAGATGGTAGAACTCTATCTGACTACAATATCCAGAA 550001 Query 206358 AGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 ||||| ||| | || | || || |||||| || Sbjct 550000 GGAGTCCACTTTGCATTTAGTATTAAGACTTAGA 549967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181820527442578