Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001306245.1_202015-10- 01] 18 sequences; 9,221,024 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq7 95.1 1e-14 >seq7 Length=872730 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 25172 AACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCC 25231 || ||||| | ||||| || || || || ||||| | ||||| | ||||| ||| | Sbjct 577633 AATATGCAGATTTTTGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCT 577692 Query 25232 AACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGAT 25291 ||||| || ||| | || || ||| ||| ||||| || || || || || ||| Sbjct 577693 TCAGATACAATTGAGAATGTTAAGGCAAAGATTCAAGATAAGGAAGGAATCCCACCTGAT 577752 Query 25292 CAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTAC 25351 || ||| | | || | | || |||||| | || |||| ||||| | || |||||| Sbjct 577753 CAACAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTAC 577812 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || ||||||||||| ||||| | || ||||| | ||| | ||||| || Sbjct 577813 AACATTCAAAAAGAGTCCACTTTACACTTAGTCCTGAGACTTAGAGGTGG 577862 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || || || || || ||||| | ||||| | ||||| || ||| | Sbjct 577864 ATGCAGATTTTCGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGA-GCCTTC 577922 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||| || ||| | || || ||| ||| ||||| ||||| || || || ||||| Sbjct 577923 AGATACAATTGAGAATGTTAAGGCAAAGATTCAAGATAAGGAGGGAATCCCACCTGATCA 577982 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| | | || | | || |||||| | || |||| ||||| | || || ||||| Sbjct 577983 ACAACGTTTAATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGACTACAA 578042 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||||||||| || || | |||||||| || ||| | ||||| || Sbjct 578043 CATTCAAAAAGAGTCTACTTTACATTTAGTATTGAGACTCAGAGGTGG 578090 Score = 89.7 bits (98), Expect = 5e-13 Identities = 152/218 (70%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 25187 GTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC-GATACTATCGA 25245 || || || || || ||||| | ||||| | ||||| || ||| | ||||| || || Sbjct 578405 GTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGA-GCCTTCAGATACAATTGA 578463 Query 25246 GCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCAT 25305 | | || || ||| ||| ||||| || || || || || ||||| ||| | | || Sbjct 578464 GAATGTTAAGGCAAAGATTCAAGATAAGGAAGGAATCCCACCTGATCAACAACGTTTGAT 578523 Query 25306 TTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAATATTCAAAAAGA 25365 | | || |||||| | || |||| ||||| | || |||||||| ||||||||||| Sbjct 578524 CTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTACAACATTCAAAAAGA 578583 Query 25366 ATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 ||||| | || ||||| | ||| | ||||| |||| Sbjct 578584 GTCCACTTTACACTTAGTCCTGAGACTTAGAGGCGGAA 578621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445094299853760