Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001306245.1_202015-10- 01] 18 sequences; 9,221,024 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq2 376 3e-99 >seq2 Length=1238148 Score = 376 bits (416), Expect = 3e-99 Identities = 1185/1814 (65%), Gaps = 28/1814 (2%) Strand=Plus/Minus Query 76817 TAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTG-TCA 76875 || ||| || || || ||||||||||| |||| || || |||||||| || | | Sbjct 381705 TAAATAATAAATGCCTGTTTTTAGACCTTTTTTCCAACCATAAAAATGCATAGATGATAA 381646 Query 76876 GTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAG 76935 |||| || | ||| || | |||||||| |||| || || |||| | | | Sbjct 381645 CTTTGCAA-AGTTAGCATTTTCCATATGAATGTTCAAAGATTGCGATTGACAAACATATG 381587 Query 76936 CTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGA 76995 || ||||| || ||||| | || | |||||||| ||||||||| | ||| || Sbjct 381586 GACCCCTATCTGCAGCCATATCAATTACTGTCTTTTGCTTAATTTCCCATACAGTCTTAT 381527 Query 76996 AAA-CTTGTTTGATATCATCTGGAAGGTT---TGTATTTTGAATGGAACCACCATCTGAT 77051 ||| || | | ||||| || |||| | | |||||||||| ||| || || Sbjct 381526 AAAGCTCGCGT-ATATCTTCCGGAATTGTAAGTATATTTTGAATACTGCCATTATTTGCA 381468 Query 77052 ATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGA 77111 ||||| | | ||| | ||||| ||| || |||| |||| | | || | | Sbjct 381467 ATAATATTCTGCTTAAGCCTATCATCCCATAACCCAAGCTCTAGTAAATCATTTAGCAAA 381408 Query 77112 TGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTA 77171 || ||||| |||| || || ||||| | |||||||||| ||||| || |||| Sbjct 381407 TGCGGATTTACTACAAAGAACTCACCAGATAGTACTCTACGATGATAAATGTTCGAGGTA 381348 Query 77172 TATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGT 77231 |||| || | | |||||||| || |||||||| | ||| || || |||||||| || Sbjct 381347 AATGGCTCAAAACTCTCATTGTTACCTAAAATTTGCGAAGTGGATGCTGTTGGCATTGGA 381288 Query 77232 GCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAA 77291 | | |||| | ||| | | ||||||| | || ||||||| || | | |||| Sbjct 381287 GATATTAATAGAGAATTACGAATACCATGTTTGGAAATCCTATCTTTAAGCAAATCCCAA 381228 Query 77292 TCCCAAAGATCTGAA---GGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTA 77348 || ||||| | || ||| ||| |||| | ||| |||||| ||| || ||||| Sbjct 381227 TCACAAAGTCCAGAGTCTGGTGTAACTCCCCACATATCAAATTGTAAAATACCCTTACTC 381168 Query 77349 GCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCT 77408 ||| || || ||||||||| || || || | | |||| || || ||||| || || Sbjct 381167 GCAGGCGAACCGGAATATGTTTCGTATGGCCCGTATTTTTCTGCAAGCTCACAGCTAGCG 381108 Query 77409 TCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATA 77468 || | ||| | ||||| || ||| ||||| | ||||| | | | ||| | | Sbjct 381107 TCGAGAGCTGCATAATAGATAACTTCAAAAATTTGTTTATTTAACTTCTTAGCTCCCTCA 381048 Query 77469 CTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCA 77528 || |||| | | | | ||||| ||||| | || |||| ||||| || Sbjct 381047 GACTCGTACGGCATACGAAGCATCATAAAACAGTCTGCGAGCCCTTGAATGCCAATCCCC 380988 Query 77529 ATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCT 77588 | || | |||||| ||| || ||||| ||| | || |||||| || ||| Sbjct 380987 AATGGACGATGTCTTAAATTCGATTTTTTACACTCTTTGAGAGAATAATATCCAACGTCA 380928 Query 77589 ATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCA 77648 || | |||||| | ||| || || || || || || |||| ||| ||||||| Sbjct 380927 ATCAATTTATTCAAATTCCTCGTAATCACCTTCGTAACTTCTTTTAACTTATCAAAATCA 380868 Query 77649 AA--TCTTCC-ATCTATAACAAACA-TGTTCAAAG--CTATAGATGCTAGATTACAAACT 77702 || |||| || | || ||| | | || ||| | ||||| || |||||||| || Sbjct 380867 AACGTCTTGTTATTTTTATCAACGAATTTTGGAAGGCCAATAGACGCCAGATTACAGACG 380808 Query 77703 GCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATA 77762 || || || | | | | | |||| ||| || || || |||| ||||| | ||| Sbjct 380807 GCAACTTCGTCCGTGCTAGTGTATTCTATGATTTCTGTGCATAAGTTACTTGAAACAATA 380748 Query 77763 GTGCCCAGATTTTGTTGGTTGCTCTTTTTATT-GCATGAGTCCTTATAAAGAATAAACGG 77821 || |||| ||||| ||||| || || |||| ||| | || |||||| |||||| || Sbjct 380747 GTTCCCAAATTTTTCTGGTTACTTTTGCTATTTGCAGCA-TCTTTATAACAAATAAATGG 380689 Query 77822 AGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCAT 77881 ||||| || ||||| || | | | || | ||| | | ||| || || |||| Sbjct 380688 TGTCCCCGTCTCAATTTGAGCCTGTAAGATTAAGAACCAAA-GTTTCT-GCGCTT-TCAT 380632 Query 77882 AGATTTGTATC----GCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTC 77937 | ||| || |||| | | | ||||| | ||||||| | ||| ||||| | Sbjct 380631 CGTTTTCCTTCCACGGCCT-TGTTTCTCATACTCTTCATATAGCTTCTTAAAATCATCGC 380573 Query 77938 CCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTT 77997 |||||||||| | |||||| |||||||| ||||||||| | | ||| || ||| | Sbjct 380572 CCCAAACATCTTGCAATCCCCTGCATTCATCTGGGCACATTAGAGTCCAATCTTGATCCT 380513 Query 77998 CCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTC 78057 || ||||| || ||| || |||||||| | ||| || ||| ||| ||||| || || Sbjct 380512 TCTCAACTCTTTCCATGAACAGATCAGGAACCCAAAGGGCAGGAAAGAGATCGCGACATC 380453 Query 78058 TATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCC 78117 | ||||| ||||| |||||| | | || | |||||| | || |||| |||| Sbjct 380452 TCATCTCTTCCTTTCCGTGATTCTTCCTGATTTCAATAAACTCTACAACATCAACGTGCC 380393 Query 78118 ATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATC 78177 | || || | ||| ||||| || | || || || || || ||||| ||||| | Sbjct 380392 ACGGCTCCAAATAAATTGCAATGGCACCTTTACGCTTCCCTCCACCTTGATCAATATACC 380333 Query 78178 TGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTC 78237 | || |||| ||||||||| | || ||| ||||| | || |||||| | |||||||||| Sbjct 380332 TAGCAGTGTCATTATAAACGCGCAGCATCGGAATTAATCCATTAGATCTCCCATTTGTTC 380273 Query 78238 CAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCA 78297 | |||||| ||| || | | ||||||||| | | | ||| | || || || Sbjct 380272 CTCGAATATATGAACCAGTTCCTCTAATATTACTCACTGCCACCCCAAGACCACCCGCAG 380213 Query 78298 TCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCA 78357 ||||| || ||||| | | ||| || ||||||| | ||| || || Sbjct 380212 TCTTACTAATGTTTGCGCATTTAGTTAGTGTGTCAAAGATACCGTTTATTGAATCTTCTG 380153 Query 78358 TCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATG 78417 || | || | |||||| ||||||||| | | ||| |||| |||||| | || Sbjct 380152 GAATCCTGAGTAAAAAACAAGATGACATTTGAGGTCGTGGAGTGCCTGAATTAAAGAGTG 380093 Query 78418 TCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATT 78477 | || | |||||| ||||| |||||| || | | | |||||||||| || | || Sbjct 380092 TGGGTGTTGCATGAGTAAAATATTTTTGCGATAACAACTCATATGTTTCAAGTGCAGCTT 380033 Query 78478 CTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAA 78537 | || || | |||||| || | || ||||||| | ||| || |||||||| | Sbjct 380032 CAATATCACCACAATGAATACCACAAGAGACCCGCATCAGAAGATGTTGTGGTCTTTCCA 379973 Query 78538 CCGTCTTATTATTTATTTTCAACAAG-TATGATTTTTCCAAAGTTTTAAAACCAAAATAG 78596 | || || | ||||| || ||| || ||| |||| | |||||| || ||||||| Sbjct 379972 CAACTTTGTTGTCAATTTT-AAGAAGATAGGATCTTTCTAGAGTTTTGAAGGCAAAATAA 379914 Query 78597 TTGTATGAAAAGTC 78610 | |||| ||| || Sbjct 379913 TCGTATTCAAAATC 379900 Score = 206 bits (228), Expect = 4e-48 Identities = 586/885 (66%), Gaps = 29/885 (3%) Strand=Plus/Plus Query 47826 TCTTCTTGA--GAC-ATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAA 47882 || |||||| ||| |||||||| ||||||||||||| || | || ||||| || Sbjct 86687 TCATCTTGATTGACCATAACTCCAGCCATTTGATATTCACCAACTCTCTTTTCGAAGAAG 86746 Query 47883 TTAGTTTTGCCTTCCAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAA 47942 |||||||| |||| | ||| ||| ||||| ||||||| |||||| | || || Sbjct 86747 TTAGTTTTACCTTGAAGTGAAATAAGGTCCATCCAATCAAAAGGATTAGAAACGTTGTAG 86806 Query 47943 AtttttttAA-ATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTT 48001 |||||| || |||| || | ||| | |||||| ||||| ||||| |||||| Sbjct 86807 ATTTTTGGAATATCC-AAGGCAAAAAGTAATCTATCAGCAACAAATTCAATATATTGGGC 86865 Query 48002 CATCATTTCACAATTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTG 48061 ||| | | ||||||| || ||||| | ||| || |||| || |||||| | | Sbjct 86866 CATAAGTCTCGAATTCATACCAATAAGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCT 86925 Query 48062 TTCGATAGTGACAGCATCCACTATTATCGATGTTACCGTTTCCTC--ACTTGGTGGATAC 48119 ||| | ||||| || ||| || |||| || || | |||| | Sbjct 86926 TTCAACTTCAACAGCTTCTGATATGATT--TGTT---GTACTCTAGGAGCTGGTAATTTA 86980 Query 48120 AACAAATG---TTTAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTA 48176 || | | |||| | |||||||| ||||||||| ||| ||||||||||| | |||| Sbjct 86981 AATTTAAGGGCTTTATATATTAAACAAGCAAAATCAGCATGGAGACCTTCATCACGACTA 87040 Query 48177 ATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATT 48236 || | ||| |||||||||||||| || ||||| |||||||||||||| |||||||| ||| Sbjct 87041 ATAAGTTCATTAGAAAATGTGAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAATT 87100 Query 48237 GCCGCGAAAGAT-CCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTC 48295 | | | |||| | |||||||| | || ||||| || || ||| | ||| ||| || Sbjct 87101 G-CACAAAAGCTACCAGAAAATAGAATTCCTTCAACAGCACAGAATCCAATAATTCTTTC 87159 Query 48296 TCCGTAACTGGCTTCGTTGTGTATCCA-CCGTT---GTGCCCAATCAGCCTTCTTCTTTA 48351 | || ||| | | || || || || |||||| || || ||||| |||| Sbjct 87160 AGCAAAA----GATCGCTCAGAATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTTA 87215 Query 48352 CACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGT 48411 || || || || | |||||| | | ||| || | || ||| | Sbjct 87216 CAGCTTCAATATGAGAAATTGCTTCAAAGAGCATTTGACGTTCTTTAATTTCAGTAATAT 87275 Query 48412 AAGTATCTATTA--AAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAA 48469 | |||| || | || || ||| |||| || || | |||||| | ||| ||||| Sbjct 87276 ATCTATCAATAAGTAATGA--ATAAGTTTCACTATGTATTTGTTCAATAGACATTTGAAA 87333 Query 48470 TCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATT 48529 | ||| | ||| ||||| | || |||| || || || | | || || || Sbjct 87334 AGCATAATACATTCTAGCTTCCGGTATTTGTATTTCTCTAAGGAAATTTACTGCTAAGTT 87393 Query 48530 CTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTT 48589 || | || || |||||||| |||||||| |||||||| |||| ||| ||||||| | | Sbjct 87394 TTCCATAACAATACCATCACTTGCAGCAAAGAATGCTAAAACATATTTGATAAAATGTCT 87453 Query 48590 TTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGC 48649 ||| | | || | | ||| || | |||||| || ||| | |||||||| Sbjct 87454 TTCAGGGTCTTTAAGACTTTCCCAATCTCTAGTATCTTGACTTAGATCAATTTCTTCAGT 87513 Query 48650 TGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATC 48694 |||||| || || || |||||||||||||| ||| ||||| Sbjct 87514 AACCCAAAACGACGCTTCAGCTTTTTTATACATTGACCAAATATC 87558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694668643699520