Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001306245.1_202015-10- 01] 18 sequences; 9,221,024 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq2 302 6e-77 >seq2 Length=1238148 Score = 302 bits (334), Expect = 6e-77 Identities = 1178/1827 (64%), Gaps = 45/1827 (2%) Strand=Plus/Minus Query 75412 TAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAG 75471 || ||| || || || ||||||||||| |||| || || |||||||| || || Sbjct 381705 TAAATAATAAATGCCTGTTTTTAGACCTTTTTTCCAACCATAAAAATGCATAGATGATAA 381646 Query 75472 TTTGGAATAACTCGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGC 75531 || | | | | | || | |||||||| |||| || || |||| | | | Sbjct 381645 CTTTGCAAAGTTAGCATTTTCCATATGAATGTTCAAAGATTGCGATTGACAAACATATGG 381586 Query 75532 TCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAA 75591 || ||||| || ||||| | || | |||||||| ||||||||| | ||| || | Sbjct 381585 ACCCCTATCTGCAGCCATATCAATTACTGTCTTTTGCTTAATTTCCCATACAGTCTTATA 381526 Query 75592 AA-CTTGTTTGATATCATCTGGAAGATT---TGTATTTTGAATGGATCCGCCATCAGATA 75647 || || | | ||||| || |||| | | |||||||||| | ||||| | | Sbjct 381525 AAGCTCGCGT-ATATCTTCCGGAATTGTAAGTATATTTTGAATA---CTGCCATTATTTG 381470 Query 75648 TAATTGTATTCT---TGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGA 75704 ||| |||||| | | | ||||| ||| || ||| |||| | | || | Sbjct 381469 CAATAATATTCTGCTTAAGCCTATCATCCCATAACCCAAGCTCTAGTAAATCATTTAGCA 381410 Query 75705 GATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGG 75764 ||| ||||| || | || || ||||| | |||||| ||| ||||| || || Sbjct 381409 AATGCGGATTTACTACAAAGAACTCACCAGATAGTACTCTACGATGATAAATGTTCGAGG 381350 Query 75765 TATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAG 75824 || |||| || | | |||||||| || |||||||| | ||| || || || ||||| | Sbjct 381349 TAAATGGCTCAAAACTCTCATTGTTACCTAAAATTTGCGAAGTGGATGCTGTTGGCATTG 381290 Query 75825 GTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCC 75884 | | | |||| | ||| | | ||||||| | || ||||||| || | | || Sbjct 381289 GAGATATTAATAGAGAATTACGAATACCATGTTTGGAAATCCTATCTTTAAGCAAATCCC 381230 Query 75885 AATCCCAAAGATCTGA---TGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGC 75941 |||| ||||| | || |||| ||| |||| | ||| |||||| ||| || || | Sbjct 381229 AATCACAAAGTCCAGAGTCTGGTGTAACTCCCCACATATCAAATTGTAAAATACCCTTAC 381170 Query 75942 TAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCG 76001 | ||| || || |||||||||||| | ||||| ||||| || || || || || | Sbjct 381169 TCGCAGGCGAACCGGAATATGTTTCGTATGGCCCGTATTTTTCTGCAAGCTCACAGCTAG 381110 Query 76002 CCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATT-AAGATCTT-GCGCTTC 76059 | || | || | ||||| || ||| ||||| | ||||| || |||| || | Sbjct 381109 CGTCGAGAGCTGCATAATAGATAACTTCAAAAATTTGTTTATTTAACTTCTTAGCTCCCT 381050 Query 76060 AAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAAT 76119 ||||| | | || | | | | ||||| ||||| || || |||| ||||| Sbjct 381049 CAGACT--CGTACGGCATACGAAGCATCATAAAACAGTCTGCGAGCCCTTGAATGCCAAT 380992 Query 76120 ACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAAT 76179 || | || | |||||| ||| || ||| | ||| | || ||||| || Sbjct 380991 CCCCAATGGACGATGTCTTAAATTCGATTTTTTACACTCTTTGAGAGAATAATATCCAAC 380932 Query 76180 ATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAA 76239 || || | |||||| | ||| || || || || || || |||| || ||| Sbjct 380931 GTCAATCAATTTATTCAAATTCCTCGTAATCACCTTCGTAACTTCTTTTAACTTATCAAA 380872 Query 76240 ATCAAA-----TTTTCCATCTATCA-CAAACATATTAAGAGCTATAGATGCTAGATTACA 76293 |||||| | || | ||||| | || | ||| | ||||| || |||||||| Sbjct 380871 ATCAAACGTCTTGTTATTTTTATCAACGAATTTTGGAAGGCCAATAGACGCCAGATTACA 380812 Query 76294 AACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTT 76353 ||||| || || | | | | |||| ||| || || ||||||| ||||| | Sbjct 380811 GACGGCAACTTCGTCCGTGCTAGTGTATTCTATGATTTCTGTGCATAAGTTACTTGAAAC 380752 Query 76354 GATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATG-AG--TCCTTATAAAGAAC 76410 |||||||| | ||||| ||||| || |||| || || || || |||||| || Sbjct 380751 AATAGTTCCCAAATTTTTCTGGTTACT---TTTGCTATTTGCAGCATCTTTATAACAAAT 380695 Query 76411 AAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTT 76470 ||| || || || || ||||| || | | | || | ||| | | ||| || | Sbjct 380694 AAATGGTGTCCCCGTCTCAATTTGAGCCTGTAAGATTAAGAACCAAA-GTTTCT-GCGCT 380637 Query 76471 TATTATAGATTTGTATC----GCTTCTCTCTTTCATATTGTGTATATAACCGTTCAAATT 76526 | | || | ||| || || | | | | ||||| | | ||||| | | ||| | Sbjct 380636 T-TCATCGTTTTCCTTCCACGGCCT-TGTTTCTCATACTCTTCATATAGCTTCTTAAAAT 380579 Query 76527 CATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCAC 76586 |||| ||||||||||| | ||| || ||||||| || ||||| | | ||| || Sbjct 380578 CATCGCCCCAAACATCTTGCAATCCCCTGCATTCATCTGGGCACATTAGAGTCCAATCTT 380519 Query 76587 CATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTC 76646 ||| | || ||| | || ||| || |||||||| | ||| || ||| ||| ||||| | Sbjct 380518 GATCCTTCTCAACTCTTTCCATGAACAGATCAGGAACCCAAAGGGCAGGAAAGAGATCGC 380459 Query 76647 GGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAG 76706 | ||| ||||| ||||| |||||| | | || | ||||| | || |||| Sbjct 380458 GACATCTCATCTCTTCCTTTCCGTGATTCTTCCTGATTTCAATAAACTCTACAACATCAA 380399 Query 76707 AATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTA 76766 ||||| || || | ||| || || || |||| || || || || ||||| | Sbjct 380398 CGTGCCACGGCTCCAAATAAATTGCAATGGCACCTTTACGCTTCCCTCCACCTTGATCAA 380339 Query 76767 TATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCAT 76826 |||| || ||||||| ||||||||| | || ||| ||||| | || |||||| | |||| Sbjct 380338 TATACCTAGCAGTGTCATTATAAACGCGCAGCATCGGAATTAATCCATTAGATCTCCCAT 380279 Query 76827 TTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTC 76886 ||||||| |||||| ||| | | | ||||||||| | | | || | || | Sbjct 380278 TTGTTCCTCGAATATATGAACCAGTTCCTCTAATATTACTCACTGCCACCCCAAGACCAC 380219 Query 76887 CTGCCATTTTA--GAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACT 76944 | || | ||| | || | ||| ||| | ||||||| |||| || | ||| Sbjct 380218 CCGCAGTCTTACTAATGTTTGCGCATTTAGTT--AGTGTGTCAAAGATACCGTTTATTGA 380161 Query 76945 ATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATT 77004 ||| || || | || | |||||| ||||||||| | | ||| |||| ||| Sbjct 380160 ATCTTCTGGAATCCTGAGTAAAAAACAAGATGACATTTGAGGTCGTGGAGTGCCTGAATT 380101 Query 77005 AAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAAT 77064 ||| | ||| || | ||||||||| || |||||| || | | | |||||||||| Sbjct 380100 AAAGAGTGTGGGTGTTGCATGAGTAAAATATTTTTGCGATAACAACTCATATGTTTCAAG 380041 Query 77065 AACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGG 77124 | ||||| ||||| | |||||| || || ||| ||||||| | ||| || || Sbjct 380040 TGCAGCTTCAATATCACCACAATGAATACCACAAGAGACCCGCATCAGAAGATGTTGTGG 379981 Query 77125 TCGTTCTACAGTCTTATTATTTATTTTCAACAAG-TATGATTTTTCCAAAGTTTTAAAAC 77183 || ||| ||| || || | ||||| || ||| || ||| |||| | |||||| || Sbjct 379980 TCTTTCCACAACTTTGTTGTCAATTTT-AAGAAGATAGGATCTTTCTAGAGTTTTGAAGG 379922 Query 77184 CAAAATAGTTGTATGAAAAGTCTCTTT 77210 ||||||| | |||| ||| || |||| Sbjct 379921 CAAAATAATCGTATTCAAAATC-CTTT 379896 Score = 239 bits (264), Expect = 6e-58 Identities = 590/880 (67%), Gaps = 19/880 (2%) Strand=Plus/Plus Query 46315 TCTTCTTG--TGAC-ATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAA 46371 || ||||| |||| |||||||| |||| |||||||| || | || ||||| || Sbjct 86687 TCATCTTGATTGACCATAACTCCAGCCATTTGATATTCACCAACTCTCTTTTCGAAGAAG 86746 Query 46372 TTAGTTTTGCCTTCCAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAA 46431 |||||||| |||| | ||| ||| ||||| ||||||| ||||||| ||| || || Sbjct 86747 TTAGTTTTACCTTGAAGTGAAATAAGGTCCATCCAATCAAAAGGATTAGAAACGTTGTAG 86806 Query 46432 AtttttttAA-ATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTT 46490 |||||| || |||| || | ||| | |||||| ||||| ||||| ||||| Sbjct 86807 ATTTTTGGAATATCC-AAGGCAAAAAGTAATCTATCAGCAACAAATTCAATATATTGGGC 86865 Query 46491 CATCATTTCACAATTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTG 46550 ||| | | ||||||| || || || | || || |||| || |||||| | | Sbjct 86866 CATAAGTCTCGAATTCATACCAATAAGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCT 86925 Query 46551 TTCAATAGTGACAGCATCCGATATTATCGATGTTACTGTTTCCTCACTTGGTGGATGCA- 46609 ||||| ||||| || ||||| || | |||| | | |||| | | Sbjct 86926 TTCAACTTCAACAGCTTCTGATATGATTTGTTGTACTCTAGGAGC---TGGTAATTTAAA 86982 Query 46610 -TCAAATG-TTTAAACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAAT 46667 | || | |||| | |||||||| ||||||||| ||| || |||||||| | |||||| Sbjct 86983 TTTAAGGGCTTTATATATTAAACAAGCAAAATCAGCATGGAGACCTTCATCACGACTAAT 87042 Query 46668 TAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGC 46727 | ||| |||||||||||||| |||||||| |||||||| ||||| |||||||| || | Sbjct 87043 AAGTTCATTAGAAAATGTGAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAATTG- 87101 Query 46728 CGCGAAAGAT-CCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTC 46786 | | |||| | |||||||| | || ||||| ||||| |||| | | || ||| || Sbjct 87102 CACAAAAGCTACCAGAAAATAGAATTCCTTCAACAGCACAGAATCCAATAATTCTTTCAG 87161 Query 46787 CGTAA-CTGGCATCATTATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAA 46845 | || | || ||| || ||||| | ||||| || || || || |||||| Sbjct 87162 CAAAAGATCGC-TCAGAATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTTACAGCT 87220 Query 46846 GGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTA 46905 || || || | |||||| | | ||| | | | || ||| |||| || Sbjct 87221 TCAATATGAGAAATTGCTTCAAAGAGCATTTGACGTTCTTTAATTTCAGTAATATATCTA 87280 Query 46906 TCTATTA--AAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGT 46963 || || | || || ||| |||| ||| || | |||||||| ||| ||||| | | Sbjct 87281 TCAATAAGTAATGA--ATAAGTTTCACTATGTATTTGTTCAATAGACATTTGAAAAGCAT 87338 Query 46964 AAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCAT 47023 || | ||| ||||| | || |||| ||| || || | | | || || || Sbjct 87339 AATACATTCTAGCTTCCGGTATTTGTATTTCTCTAAGGAAATTTACTGCTAAGTTTTCCA 87398 Query 47024 TCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCAT 47083 | || || |||||||| |||||||| ||||| || |||| ||| ||||||| | ||||| Sbjct 87399 TAACAATACCATCACTTGCAGCAAAGAATGCTAAAACATATTTGATAAAATGTCTTTCAG 87458 Query 47084 CGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCC 47143 | | || | | ||| || | |||||| || ||| | |||||||| || Sbjct 87459 GGTCTTTAAGACTTTCCCAATCTCTAGTATCTTGACTTAGATCAATTTCTTCAGTAACCC 87518 Query 47144 AGAATGACGCCTCTGCTTTTTTATACATATTCCATATATC 47183 | || ||||| || |||||||||||||| ||| ||||| Sbjct 87519 AAAACGACGCTTCAGCTTTTTTATACATTGACCAAATATC 87558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712934239589760