Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20parvum_20[genbank_20GCA_5F001306245.1_202015-10- 01] 18 sequences; 9,221,024 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq2 269 3e-67 >seq2 Length=1238148 Score = 269 bits (298), Expect = 3e-67 Identities = 596/877 (68%), Gaps = 55/877 (6%) Strand=Plus/Plus Query 23219 TTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTCTAATGATATATTTT 23278 |||||||||| ||||| | ||||||| || || || ||||| | | ||| ||| | Sbjct 86715 TTTGATATTCACCAACTCTCTTTTCGAAGAAGTTAGTTTTACCTTGAAGTGAAATAAGGT 86774 Query 23279 CCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTTACATGAT--AATTCCTTTAA 23336 |||| ||||||| ||||||||| || || | ||| | || || | || Sbjct 86775 CCATCCAATCAAAAGGATTAGAAACGTTGTAGATT--TTTGGAATATCCAAGGCA---AA 86829 Query 23337 AAGC---CTATCTGCTACAAATTCAATATATTGACACATCAAATCAT-AGTTTATACCTA 23392 ||| ||||| || ||||||||||||||||| ||| || || | || ||||| | Sbjct 86830 AAGTAATCTATCAGCAACAAATTCAATATATTGGGCCAT-AAGTCTCGAATTCATACCAA 86888 Query 23393 TTAGTTTTACTGGAATCGCATCATATAAGAATAGTTT--TTCAATGGAAACAGCATCTTT 23450 | || | || |||| | ||| | ||||| ||||| ||||| |||||| ||| Sbjct 86889 TAAGATCAACAGGAAGAGAGTCACA-AAGAA-AGTTTCTTTCAACTTCAACAGCTTCTGA 86946 Query 23451 AATTATTTGAACAATAACTTCTTCACTAGGTG--GATATTTTAAATAC-------TTAAA 23501 || ||||| || | | ||||| | | || ||||||| ||| | Sbjct 86947 TATGATTTG---------TTGTACTCTAGGAGCTGGTAATTTAAATTTAAGGGCTTTATA 86997 Query 23502 CAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAA 23561 | |||||| ||||||||| ||| || |||||||| | |||||| | |||||||||||| Sbjct 86998 TATTAAACAAGCAAAATCAGCATGGAGACCTTCATCACGACTAATAAGTTCATTAGAAAA 87057 Query 23562 TGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGAT-CCGG 23620 ||| | ||| ||||| | ||| |||||||||| |||||| |||||| |||| | | || | Sbjct 87058 TGTGAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAATTGCA-CAAAAGCTACCAG 87116 Query 23621 AAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTT-GCATTA 23679 |||| | ||| || |||||||| || | | || | | | |||| | | || Sbjct 87117 AAAATAGAATTCCTTCAACAGCACAGAATCCAATAATTCTTTCAGCAAAAGATCGC---- 87172 Query 23680 TAATCAGAA---ATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTT 23736 |||||| |||||||| ||| ||| | || ||| ||||||| ||||| Sbjct 87173 ---TCAGAATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTTACAGCTTCAATATGA 87229 Query 23737 TCAATTGCTTTTAAGAGAAAAGTTTT---TTCTTCATTATCTGTTATATATGTATCAATT 23793 |||||||| ||||| | ||| ||||| | | || || |||||| ||||||| Sbjct 87230 GAAATTGCTTCAAAGAGCA---TTTGACGTTCTTTAATTTCAGTAATATATCTATCAATA 87286 Query 23794 AGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACAT 23853 ||||| ||| ||||| ||| || | |||||||| || ||||| ||||| | | Sbjct 87287 AGTAATGAATAAGTTTCACTATGTATTTGTTCAATAGACATTTGAAAAGCATAATACATT 87346 Query 23854 CTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATA 23913 |||||||| | | ||| | || ||| || || ||||| ||||| |||||||| Sbjct 87347 CTAGCTTCCGGTATTTGTATTTCTCTAAGGAAATTTACTGCTAAGTTTTCCATAACAATA 87406 Query 23914 CCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGAT 23973 |||||||| ||||||||||| || | ||||||||| ||||||||||||||| || | Sbjct 87407 CCATCACTTGCAGCAAAGAATGCTAAAACATATTTGATAAAATGTCTTTCA-GGGTCTTT 87465 Query 23974 AA-TTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACT 24032 || ||| |||||| || |||||| || ||||| ||| ||| |||||| Sbjct 87466 AAGACTTTCCCAATCTCTAGTATCTTGACTTAGATCAATTTCTTCAGTAACCCAAAACGA 87525 Query 24033 TGCCAAGGCACGCTTATACATTAGCCAAATATCATTA 24069 || || ||||||||| ||||||||| ||| Sbjct 87526 CGCTTCAGCTTTTTTATACATTGACCAAATATCTTTA 87562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521487882665200